Information for 22-CCGTTATT (Motif 20)

A G T C T G A C A T C G A C G T A C G T G T C A C A G T C G A T
Reverse Opposite:
C G T A G T C A A C G T C G T A T C G A T A G C A C T G A C T G
p-value:1e-10
log p-value:-2.341e+01
Information Content per bp:1.840
Number of Target Sequences with motif340.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif3247.0
Percentage of Background Sequences with motif7.02%
Average Position of motif in Targets420.1 +/- 269.0bp
Average Position of motif in Background366.0 +/- 214.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OVOL1/MA1544.1/Jaspar

Match Rank:1
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----CCGTTATT--
AAAACCGTTATTTG
 A C G T A C G T A C G T A C G T A G T C T G A C A T C G A C G T A C G T G T C A C A G T C G A T A C G T A C G T
C G T A C T G A C G T A G C T A A G T C A G T C C A T G A C G T A C G T G T C A A G C T A G C T G A C T A T C G

OVOL2/MA1545.1/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---CCGTTATT--
GTACCGTTATGTG
 A C G T A C G T A C G T A G T C T G A C A T C G A C G T A C G T G T C A C A G T C G A T A C G T A C G T
C T A G C G A T G C T A T A G C A T G C A C T G A G C T A C G T T C G A A G C T C A T G G A C T A T C G

PB0046.1_Mybl1_1/Jaspar

Match Rank:3
Score:0.71
Offset:-7
Orientation:forward strand
Alignment:-------CCGTTATT--
TTGAAAACCGTTAATTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G A C A T C G A C G T A C G T G T C A C A G T C G A T A C G T A C G T
G A C T C G A T C A T G C G T A G C T A C T G A C T G A G T A C A T G C A C T G A C G T G A C T C T G A G C T A G C A T G A C T C G A T

PB0045.1_Myb_1/Jaspar

Match Rank:4
Score:0.71
Offset:-7
Orientation:forward strand
Alignment:-------CCGTTATT--
ATGGAAACCGTTATTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G A C A T C G A C G T A C G T G T C A C A G T C G A T A C G T A C G T
G C T A C G A T C A T G C A T G G T C A C T G A C T G A G T A C A T G C A C T G A C G T G A C T C T G A G C A T G C A T G A C T C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCGTTATT-
NCCATTGTTC
 A C G T A G T C T G A C A T C G A C G T A C G T G T C A C A G T C G A T A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

GFI1/MA0038.2/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCGTTATT--
TGCAGTGATTTN
 A C G T A C G T A G T C T G A C A T C G A C G T A C G T G T C A C A G T C G A T A C G T A C G T
C A G T C T A G G A T C G T C A A T C G C G A T C A T G C G T A C G A T A C G T A C G T T C A G

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CCGTTATT
BRRCVGTTDN-
 A C G T A C G T A C G T A G T C T G A C A T C G A C G T A C G T G T C A C A G T C G A T
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G A C G T

CDX2/MA0465.2/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CCGTTATT----
NTTTTATTGCNN
 A G T C T G A C A T C G A C G T A C G T G T C A C A G T C G A T A C G T A C G T A C G T A C G T
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CCGTTATT-----
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A G T C T G A C A T C G A C G T A C G T G T C A C A G T C G A T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CCGTTATT-----
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A G T C T G A C A T C G A C G T A C G T G T C A C A G T C G A T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T