Information for 9-CNSSCAGCTG (Motif 5)

A G T C C A T G T A C G T A C G T A G C C G T A C A T G G T A C G C A T T C A G
Reverse Opposite:
A G T C C G T A C A T G G T A C G C A T A T C G A T G C A T G C G T A C T C A G
p-value:1e-45
log p-value:-1.045e+02
Information Content per bp:1.598
Number of Target Sequences with motif1327.0
Percentage of Target Sequences with motif39.04%
Number of Background Sequences with motif12835.1
Percentage of Background Sequences with motif27.74%
Average Position of motif in Targets418.5 +/- 268.8bp
Average Position of motif in Background363.8 +/- 227.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.39
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BHLHE22(var.2)/MA1635.1/Jaspar

Match Rank:1
Score:0.97
Offset:2
Orientation:reverse strand
Alignment:CNSSCAGCTG--
--NNCAGCTGNN
 A G T C C A T G T A C G T A C G T A G C C G T A C A T G G T A C G C A T T C A G A C G T A C G T
A C G T A C G T A T G C T A C G A T G C T C G A A T C G T A G C A G C T T C A G A T G C T A C G

MYOG/MA0500.2/Jaspar

Match Rank:2
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:CNSSCAGCTG---
-NNGCAGCTGCNN
 A G T C C A T G T A C G T A C G T A G C C G T A C A T G G T A C G C A T T C A G A C G T A C G T A C G T
A C G T T A G C C T G A T C A G A G T C T C G A A C T G T G A C A G C T T C A G A G T C G A C T A T C G

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:3
Score:0.95
Offset:3
Orientation:reverse strand
Alignment:CNSSCAGCTG---
---HCAGCTGDTN
 A G T C C A T G T A C G T A C G T A G C C G T A C A T G G T A C G C A T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.94
Offset:3
Orientation:forward strand
Alignment:CNSSCAGCTG---
---NCAGCTGCTG
 A G T C C A T G T A C G T A C G T A G C C G T A C A T G G T A C G C A T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:5
Score:0.94
Offset:3
Orientation:reverse strand
Alignment:CNSSCAGCTG---
---GCAGCTGTNN
 A G T C C A T G T A C G T A C G T A G C C G T A C A T G G T A C G C A T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T

Ptf1a(var.2)/MA1619.1/Jaspar

Match Rank:6
Score:0.93
Offset:1
Orientation:forward strand
Alignment:CNSSCAGCTG---
-GCACAGCTGTGC
 A G T C C A T G T A C G T A C G T A G C C G T A C A T G G T A C G C A T T C A G A C G T A C G T A C G T
A C G T T C A G T G A C T C G A T G A C T C G A A T C G T A G C A G C T A C T G A G C T A C T G A G T C

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.93
Offset:2
Orientation:forward strand
Alignment:CNSSCAGCTG----
--AGCAGCTGCTNN
 A G T C C A T G T A C G T A C G T A G C C G T A C A T G G T A C G C A T T C A G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.93
Offset:2
Orientation:forward strand
Alignment:CNSSCAGCTG
--ANCAGCTG
 A G T C C A T G T A C G T A C G T A G C C G T A C A T G G T A C G C A T T C A G
A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G

BHLHA15(var.2)/MA1472.1/Jaspar

Match Rank:9
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:CNSSCAGCTG--
--NACAGCTGTT
 A G T C C A T G T A C G T A C G T A G C C G T A C A T G G T A C G C A T T C A G A C G T A C G T
A C G T A C G T T C G A T C G A A G T C C G T A A C T G T G A C C G A T C A T G A C G T A G C T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CNSSCAGCTG--
NNVVCAGCTGBN
 A G T C C A T G T A C G T A C G T A G C C G T A C A T G G T A C G C A T T C A G A C G T A C G T
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T