Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3399)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46273)	% of Background Sequences with Motif
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-424	-9.784e+02	0.0000	2235.0	65.75%	13470.1	29.11%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-398	-9.185e+02	0.0000	2002.0	58.90%	11280.9	24.38%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-383	-8.820e+02	0.0000	2371.0	69.76%	15938.5	34.44%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-338	-7.787e+02	0.0000	2867.0	84.35%	24229.9	52.36%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-324	-7.471e+02	0.0000	2032.0	59.78%	12975.4	28.04%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-319	-7.364e+02	0.0000	2779.0	81.76%	23232.6	50.20%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-305	-7.045e+02	0.0000	1158.0	34.07%	4739.2	10.24%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-305	-7.038e+02	0.0000	2692.0	79.20%	22215.0	48.01%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-304	-7.002e+02	0.0000	2058.0	60.55%	13698.1	29.60%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-254	-5.860e+02	0.0000	2796.0	82.26%	25231.9	54.52%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-44	-1.021e+02	0.0000	675.0	19.86%	5318.5	11.49%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-43	-9.982e+01	0.0000	560.0	16.48%	4146.5	8.96%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-38	-8.759e+01	0.0000	787.0	23.15%	6815.8	14.73%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-33	-7.700e+01	0.0000	325.0	9.56%	2126.3	4.59%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-33	-7.652e+01	0.0000	1085.0	31.92%	10574.9	22.85%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-32	-7.556e+01	0.0000	593.0	17.45%	4897.1	10.58%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-31	-7.363e+01	0.0000	1321.0	38.86%	13580.7	29.35%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-30	-6.908e+01	0.0000	1258.0	37.01%	12922.4	27.92%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-24	-5.529e+01	0.0000	997.0	29.33%	10101.3	21.83%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-23	-5.323e+01	0.0000	1588.0	46.72%	17712.2	38.27%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-20	-4.756e+01	0.0000	1329.0	39.10%	14549.6	31.44%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-20	-4.646e+01	0.0000	183.0	5.38%	1160.8	2.51%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-20	-4.635e+01	0.0000	687.0	20.21%	6632.3	14.33%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-19	-4.538e+01	0.0000	919.0	27.04%	9459.5	20.44%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-18	-4.230e+01	0.0000	482.0	14.18%	4367.6	9.44%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-18	-4.153e+01	0.0000	1045.0	30.74%	11161.1	24.12%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-17	-4.029e+01	0.0000	551.0	16.21%	5209.9	11.26%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-17	-3.921e+01	0.0000	1413.0	41.57%	15978.5	34.53%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-16	-3.754e+01	0.0000	1376.0	40.48%	15567.5	33.64%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-15	-3.461e+01	0.0000	754.0	22.18%	7807.3	16.87%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-13	-2.998e+01	0.0000	772.0	22.71%	8202.0	17.72%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-12	-2.867e+01	0.0000	1836.0	54.02%	22142.4	47.85%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-12	-2.812e+01	0.0000	949.0	27.92%	10495.1	22.68%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-12	-2.812e+01	0.0000	431.0	12.68%	4161.1	8.99%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-12	-2.791e+01	0.0000	2084.0	61.31%	25590.1	55.30%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-11	-2.759e+01	0.0000	291.0	8.56%	2582.3	5.58%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-11	-2.673e+01	0.0000	471.0	13.86%	4673.3	10.10%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-11	-2.633e+01	0.0000	593.0	17.45%	6148.1	13.29%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-11	-2.571e+01	0.0000	354.0	10.41%	3341.8	7.22%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-11	-2.571e+01	0.0000	358.0	10.53%	3387.1	7.32%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-11	-2.568e+01	0.0000	1157.0	34.04%	13279.9	28.70%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-10	-2.443e+01	0.0000	2041.0	60.05%	25193.5	54.44%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-10	-2.346e+01	0.0000	940.0	27.66%	10600.1	22.91%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-10	-2.345e+01	0.0000	143.0	4.21%	1086.3	2.35%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-9	-2.288e+01	0.0000	414.0	12.18%	4126.6	8.92%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-9	-2.219e+01	0.0000	1850.0	54.43%	22708.5	49.07%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-9	-2.198e+01	0.0000	616.0	18.12%	6601.2	14.26%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-9	-2.176e+01	0.0000	109.0	3.21%	774.3	1.67%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-9	-2.163e+01	0.0000	1723.0	50.69%	21018.7	45.42%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-9	-2.148e+01	0.0000	838.0	24.65%	9401.1	20.32%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-9	-2.130e+01	0.0000	724.0	21.30%	7973.5	17.23%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-9	-2.080e+01	0.0000	1085.0	31.92%	12607.2	27.24%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-8	-2.039e+01	0.0000	713.0	20.98%	7878.6	17.03%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-8	-1.905e+01	0.0000	867.0	25.51%	9896.6	21.39%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-8	-1.878e+01	0.0000	715.0	21.04%	7982.1	17.25%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-8	-1.876e+01	0.0000	1657.0	48.75%	20313.0	43.90%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-7	-1.801e+01	0.0000	727.0	21.39%	8172.0	17.66%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-7	-1.784e+01	0.0000	1402.0	41.25%	16957.9	36.65%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-7	-1.734e+01	0.0000	2740.0	80.61%	35515.8	76.75%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-7	-1.702e+01	0.0000	493.0	14.50%	5302.3	11.46%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-6	-1.600e+01	0.0000	1112.0	32.72%	13251.3	28.64%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-6	-1.582e+01	0.0000	1343.0	39.51%	16311.9	35.25%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-6	-1.478e+01	0.0000	815.0	23.98%	9475.7	20.48%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-6	-1.442e+01	0.0000	1426.0	41.95%	17520.2	37.86%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-6	-1.405e+01	0.0000	368.0	10.83%	3904.2	8.44%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-5	-1.360e+01	0.0000	879.0	25.86%	10376.8	22.42%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-5	-1.315e+01	0.0000	1122.0	33.01%	13582.1	29.35%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-5	-1.280e+01	0.0000	1843.0	54.22%	23283.8	50.31%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-5	-1.234e+01	0.0000	745.0	21.92%	8730.1	18.87%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-5	-1.210e+01	0.0000	493.0	14.50%	5542.5	11.98%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-5	-1.195e+01	0.0000	315.0	9.27%	3351.7	7.24%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-5	-1.186e+01	0.0000	890.0	26.18%	10639.8	22.99%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-5	-1.182e+01	0.0000	1811.0	53.28%	22930.4	49.55%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-5	-1.163e+01	0.0001	242.0	7.12%	2486.5	5.37%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-5	-1.153e+01	0.0001	1502.0	44.19%	18772.2	40.57%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-5	-1.152e+01	0.0001	561.0	16.50%	6432.3	13.90%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-4	-1.127e+01	0.0001	795.0	23.39%	9448.9	20.42%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-4	-1.121e+01	0.0001	1225.0	36.04%	15097.7	32.63%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-4	-1.108e+01	0.0001	332.0	9.77%	3598.0	7.78%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-4	-1.100e+01	0.0001	1915.0	56.34%	24424.1	52.78%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-4	-1.079e+01	0.0001	1484.0	43.66%	18595.1	40.18%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-4	-1.076e+01	0.0001	879.0	25.86%	10577.2	22.86%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-4	-1.034e+01	0.0002	312.0	9.18%	3387.3	7.32%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-4	-1.029e+01	0.0002	2752.0	80.96%	36174.5	78.17%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-4	-1.022e+01	0.0002	1562.0	45.95%	19698.5	42.57%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-4	-1.006e+01	0.0002	1184.0	34.83%	14651.4	31.66%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-4	-1.003e+01	0.0002	267.0	7.86%	2852.1	6.16%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-4	-9.677e+00	0.0003	351.0	10.33%	3901.3	8.43%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-3	-8.809e+00	0.0007	663.0	19.51%	7921.5	17.12%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-3	-8.664e+00	0.0008	1928.0	56.72%	24828.6	53.65%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-3	-8.618e+00	0.0009	1020.0	30.01%	12608.4	27.25%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-3	-8.183e+00	0.0013	249.0	7.33%	2718.5	5.87%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-3	-8.182e+00	0.0013	1177.0	34.63%	14733.8	31.84%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-8.032e+00	0.0015	1061.0	31.22%	13206.4	28.54%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-3	-7.819e+00	0.0019	1054.0	31.01%	13134.3	28.38%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-3	-7.630e+00	0.0022	296.0	8.71%	3328.7	7.19%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-3	-7.622e+00	0.0022	2454.0	72.20%	32209.5	69.60%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-3	-7.446e+00	0.0026	668.0	19.65%	8095.1	17.49%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-3	-7.335e+00	0.0029	886.0	26.07%	10960.7	23.69%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-3	-7.304e+00	0.0030	293.0	8.62%	3309.3	7.15%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-3	-7.224e+00	0.0032	192.0	5.65%	2067.6	4.47%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-2	-6.834e+00	0.0046	975.0	28.68%	12186.0	26.33%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-6.727e+00	0.0051	241.0	7.09%	2694.4	5.82%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-6.395e+00	0.0071	827.0	24.33%	10275.7	22.21%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-2	-6.322e+00	0.0075	363.0	10.68%	4254.6	9.19%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2	-6.275e+00	0.0078	1240.0	36.48%	15780.6	34.10%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-6.196e+00	0.0084	219.0	6.44%	2450.7	5.30%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-6.192e+00	0.0084	342.0	10.06%	3996.3	8.64%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-2	-6.188e+00	0.0084	257.0	7.56%	2924.3	6.32%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-6.183e+00	0.0084	163.0	4.80%	1763.0	3.81%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-5.931e+00	0.0105	728.0	21.42%	9019.2	19.49%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-2	-5.924e+00	0.0105	202.0	5.94%	2254.1	4.87%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-2	-5.862e+00	0.0111	2336.0	68.73%	30766.3	66.48%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-2	-5.852e+00	0.0111	671.0	19.74%	8279.6	17.89%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-5.606e+00	0.0141	692.0	20.36%	8579.7	18.54%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-2	-5.557e+00	0.0146	699.0	20.56%	8676.1	18.75%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-5.477e+00	0.0157	650.0	19.12%	8041.3	17.38%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-2	-5.276e+00	0.0191	129.0	3.80%	1390.4	3.00%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-2	-5.081e+00	0.0230	370.0	10.89%	4437.6	9.59%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-2	-5.072e+00	0.0230	183.0	5.38%	2065.1	4.46%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-2	-5.049e+00	0.0233	634.0	18.65%	7875.8	17.02%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-5.019e+00	0.0238	270.0	7.94%	3163.5	6.84%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-5.005e+00	0.0240	3085.0	90.76%	41401.9	89.47%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-4.990e+00	0.0241	300.0	8.83%	3547.1	7.67%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-2	-4.983e+00	0.0241	453.0	13.33%	5518.4	11.92%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-2	-4.887e+00	0.0263	764.0	22.48%	9606.7	20.76%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-2	-4.870e+00	0.0266	125.0	3.68%	1361.0	2.94%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-2	-4.771e+00	0.0291	71.0	2.09%	716.4	1.55%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-4.766e+00	0.0291	76.0	2.24%	775.7	1.68%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-4.747e+00	0.0294	80.0	2.35%	823.3	1.78%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-2	-4.621e+00	0.0331	117.0	3.44%	1274.2	2.75%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-4.585e+00	0.0340	164.0	4.82%	1856.9	4.01%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-4.581e+00	0.0340	174.0	5.12%	1981.5	4.28%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-1	-4.563e+00	0.0342	152.0	4.47%	1708.5	3.69%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-4.503e+00	0.0361	68.0	2.00%	690.9	1.49%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-4.471e+00	0.0370	23.0	0.68%	184.5	0.40%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-4.441e+00	0.0378	1161.0	34.16%	14956.5	32.32%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-4.360e+00	0.0408	595.0	17.51%	7437.4	16.07%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-4.278e+00	0.0439	2056.0	60.49%	27127.0	58.62%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-4.054e+00	0.0546	1130.0	33.25%	14596.6	31.54%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-4.026e+00	0.0557	755.0	22.21%	9592.8	20.73%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-1	-3.883e+00	0.0638	918.0	27.01%	11782.2	25.46%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.753e+00	0.0721	641.0	18.86%	8116.7	17.54%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-1	-3.644e+00	0.0799	1813.0	53.34%	23907.5	51.66%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.638e+00	0.0799	190.0	5.59%	2244.2	4.85%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-3.613e+00	0.0812	80.0	2.35%	869.0	1.88%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.576e+00	0.0838	945.0	27.80%	12188.8	26.34%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-1	-3.548e+00	0.0856	480.0	14.12%	6017.6	13.00%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.502e+00	0.0890	485.0	14.27%	6088.3	13.16%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-3.490e+00	0.0895	39.0	1.15%	384.3	0.83%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.484e+00	0.0895	260.0	7.65%	3154.5	6.82%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-3.385e+00	0.0981	2245.0	66.05%	29866.6	64.54%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-3.259e+00	0.1105	136.0	4.00%	1586.0	3.43%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-3.192e+00	0.1175	350.0	10.30%	4352.6	9.41%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.034e+00	0.1366	184.0	5.41%	2213.9	4.78%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-2.992e+00	0.1416	1616.0	47.54%	21344.4	46.12%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-2.934e+00	0.1490	497.0	14.62%	6317.3	13.65%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.892e+00	0.1545	1634.0	48.07%	21608.3	46.69%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-2.779e+00	0.1718	296.0	8.71%	3690.6	7.98%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-2.770e+00	0.1723	61.0	1.79%	675.9	1.46%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.766e+00	0.1723	913.0	26.86%	11891.8	25.70%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.697e+00	0.1830	409.0	12.03%	5185.0	11.20%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-2.642e+00	0.1922	240.0	7.06%	2973.7	6.43%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-2.572e+00	0.2050	127.0	3.74%	1518.5	3.28%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.542e+00	0.2099	458.0	13.47%	5854.3	12.65%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-2.492e+00	0.2193	900.0	26.48%	11766.3	25.43%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-2.464e+00	0.2243	560.0	16.48%	7221.3	15.60%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.455e+00	0.2250	510.0	15.00%	6557.4	14.17%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-1	-2.411e+00	0.2335	5.0	0.15%	32.7	0.07%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-2.405e+00	0.2336	217.0	6.38%	2697.4	5.83%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-2.386e+00	0.2368	368.0	10.83%	4684.8	10.12%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-2.371e+00	0.2389	207.0	6.09%	2570.1	5.55%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-1	-2.361e+00	0.2399	317.0	9.33%	4014.1	8.67%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.332e+00	0.2455	1568.0	46.13%	20828.7	45.01%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-2.324e+00	0.2462	571.0	16.80%	7390.6	15.97%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.318e+00	0.2463	116.0	3.41%	1396.9	3.02%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.184e+00	0.2798	152.0	4.47%	1872.8	4.05%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.155e+00	0.2865	13.0	0.38%	121.9	0.26%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.101e+00	0.3007	630.0	18.53%	8217.8	17.76%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.101e+00	0.3007	410.0	12.06%	5281.2	11.41%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.084e+00	0.3026	1277.0	37.57%	16938.1	36.60%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.030e+00	0.3177	919.0	27.04%	12114.2	26.18%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.980e+00	0.3319	63.0	1.85%	742.6	1.60%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.938e+00	0.3442	1113.0	32.74%	14753.2	31.88%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.913e+00	0.3513	617.0	18.15%	8078.5	17.46%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.880e+00	0.3610	455.0	13.39%	5916.9	12.79%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.877e+00	0.3610	1767.0	51.99%	23644.2	51.09%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-1.790e+00	0.3906	722.0	21.24%	9513.3	20.56%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.750e+00	0.4046	2964.0	87.20%	40093.5	86.64%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.705e+00	0.4208	362.0	10.65%	4704.5	10.17%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.690e+00	0.4250	1461.0	42.98%	19532.8	42.21%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.628e+00	0.4500	206.0	6.06%	2641.2	5.71%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.626e+00	0.4500	884.0	26.01%	11734.8	25.36%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.570e+00	0.4720	1238.0	36.42%	16539.0	35.74%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.540e+00	0.4837	332.0	9.77%	4331.3	9.36%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.508e+00	0.4970	1416.0	41.66%	18972.1	41.00%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.496e+00	0.5004	317.0	9.33%	4138.8	8.94%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.453e+00	0.5196	125.0	3.68%	1591.4	3.44%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.373e+00	0.5604	382.0	11.24%	5031.5	10.87%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.311e+00	0.5927	104.0	3.06%	1329.9	2.87%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.285e+00	0.6055	614.0	18.06%	8174.6	17.66%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.274e+00	0.6095	780.0	22.95%	10420.2	22.52%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.247e+00	0.6229	87.0	2.56%	1111.7	2.40%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.237e+00	0.6263	311.0	9.15%	4104.9	8.87%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.228e+00	0.6283	425.0	12.50%	5639.8	12.19%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-1.204e+00	0.6408	46.0	1.35%	575.1	1.24%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.191e+00	0.6461	1683.0	49.51%	22703.9	49.06%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.117e+00	0.6921	104.0	3.06%	1351.2	2.92%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.116e+00	0.6921	270.0	7.94%	3576.8	7.73%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.097e+00	0.6994	210.0	6.18%	2773.6	5.99%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.095e+00	0.6994	1784.0	52.49%	24112.1	52.10%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.084e+00	0.7019	476.0	14.00%	6361.8	13.75%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.071e+00	0.7079	53.0	1.56%	678.9	1.47%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.038e+00	0.7284	8.0	0.24%	91.6	0.20%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.022e+00	0.7368	1546.0	45.48%	20900.2	45.16%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-9.779e-01	0.7661	8.0	0.24%	93.5	0.20%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-9.649e-01	0.7726	1231.0	36.22%	16638.9	35.96%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-9.543e-01	0.7772	1582.0	46.54%	21416.9	46.28%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-9.350e-01	0.7888	827.0	24.33%	11161.7	24.12%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-8.882e-01	0.8228	951.0	27.98%	12863.0	27.80%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-8.817e-01	0.8244	455.0	13.39%	6132.0	13.25%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-8.744e-01	0.8267	2601.0	76.52%	35333.7	76.35%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-8.303e-01	0.8601	209.0	6.15%	2810.3	6.07%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-7.910e-01	0.8906	79.0	2.32%	1057.3	2.28%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.880e-01	0.8906	549.0	16.15%	7436.9	16.07%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-7.696e-01	0.9018	579.0	17.03%	7850.3	16.96%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-7.315e-01	0.9327	22.0	0.65%	293.0	0.63%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-7.297e-01	0.9327	2178.0	64.08%	29628.2	64.02%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-7.032e-01	0.9511	75.0	2.21%	1015.0	2.19%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-6.259e-01	1.0000	1841.0	54.16%	25092.3	54.22%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.970e-01	1.0000	303.0	8.91%	4149.2	8.97%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-5.871e-01	1.0000	614.0	18.06%	8397.4	18.15%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-5.835e-01	1.0000	195.0	5.74%	2677.3	5.79%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-5.822e-01	1.0000	9.0	0.26%	124.5	0.27%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.343e-01	1.0000	1056.0	31.07%	14451.2	31.23%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-5.335e-01	1.0000	1462.0	43.01%	19984.8	43.19%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-5.301e-01	1.0000	274.0	8.06%	3774.2	8.16%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-5.118e-01	1.0000	141.0	4.15%	1955.3	4.23%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-4.805e-01	1.0000	263.0	7.74%	3640.5	7.87%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-4.331e-01	1.0000	36.0	1.06%	517.2	1.12%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.267e-01	1.0000	100.0	2.94%	1410.4	3.05%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.248e-01	1.0000	87.0	2.56%	1230.8	2.66%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.101e-01	1.0000	124.0	3.65%	1747.6	3.78%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.067e-01	1.0000	358.0	10.53%	4974.2	10.75%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-4.046e-01	1.0000	65.0	1.91%	928.8	2.01%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-4.034e-01	1.0000	107.0	3.15%	1513.1	3.27%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.019e-01	1.0000	91.0	2.68%	1291.7	2.79%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-4.010e-01	1.0000	652.0	19.18%	9009.8	19.47%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-3.993e-01	1.0000	1215.0	35.75%	16704.5	36.10%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.700e-01	1.0000	1336.0	39.31%	18376.8	39.71%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-3.684e-01	1.0000	1016.0	29.89%	14009.5	30.27%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-3.460e-01	1.0000	10.0	0.29%	156.8	0.34%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-3.443e-01	1.0000	1449.0	42.63%	19937.1	43.08%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.404e-01	1.0000	36.0	1.06%	532.5	1.15%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-3.087e-01	1.0000	924.0	27.18%	12796.3	27.65%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.068e-01	1.0000	112.0	3.30%	1611.8	3.48%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-2.969e-01	1.0000	139.0	4.09%	1992.2	4.31%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-2.908e-01	1.0000	374.0	11.00%	5255.0	11.36%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.803e-01	1.0000	306.0	9.00%	4320.3	9.34%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.802e-01	1.0000	1000.0	29.42%	13860.7	29.95%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.750e-01	1.0000	521.0	15.33%	7291.8	15.76%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.747e-01	1.0000	197.0	5.80%	2810.1	6.07%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.745e-01	1.0000	333.0	9.80%	4697.6	10.15%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-2.716e-01	1.0000	325.0	9.56%	4588.2	9.91%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-2.695e-01	1.0000	396.0	11.65%	5571.6	12.04%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.482e-01	1.0000	52.0	1.53%	781.0	1.69%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.480e-01	1.0000	2956.0	86.97%	40441.5	87.39%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.338e-01	1.0000	2.0	0.06%	40.0	0.09%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.297e-01	1.0000	2077.0	61.11%	28588.3	61.78%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.279e-01	1.0000	366.0	10.77%	5184.3	11.20%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.278e-01	1.0000	609.0	17.92%	8540.6	18.46%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.213e-01	1.0000	364.0	10.71%	5161.9	11.15%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-2.170e-01	1.0000	986.0	29.01%	13729.2	29.67%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.133e-01	1.0000	495.0	14.56%	6980.4	15.08%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.107e-01	1.0000	206.0	6.06%	2969.5	6.42%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.073e-01	1.0000	882.0	25.95%	12313.4	26.61%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.049e-01	1.0000	12.0	0.35%	205.0	0.44%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.968e-01	1.0000	662.0	19.48%	9299.4	20.10%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.945e-01	1.0000	1003.0	29.51%	13987.2	30.23%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.864e-01	1.0000	210.0	6.18%	3040.1	6.57%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.859e-01	1.0000	280.0	8.24%	4019.4	8.69%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.846e-01	1.0000	587.0	17.27%	8277.3	17.89%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.790e-01	1.0000	21.0	0.62%	346.7	0.75%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.710e-01	1.0000	1226.0	36.07%	17070.5	36.89%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.563e-01	1.0000	41.0	1.21%	650.3	1.41%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.547e-01	1.0000	194.0	5.71%	2837.6	6.13%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.518e-01	1.0000	1708.0	50.25%	23674.0	51.16%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.464e-01	1.0000	789.0	23.21%	11107.1	24.00%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.417e-01	1.0000	1347.0	39.63%	18767.5	40.56%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.408e-01	1.0000	79.0	2.32%	1210.4	2.62%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-1.388e-01	1.0000	2204.0	64.84%	30425.3	65.75%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.340e-01	1.0000	125.0	3.68%	1874.6	4.05%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.288e-01	1.0000	70.0	2.06%	1086.9	2.35%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.234e-01	1.0000	672.0	19.77%	9525.2	20.58%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-1.212e-01	1.0000	841.0	24.74%	11860.9	25.63%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.185e-01	1.0000	1738.0	51.13%	24138.1	52.16%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.149e-01	1.0000	126.0	3.71%	1902.2	4.11%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.149e-01	1.0000	126.0	3.71%	1902.2	4.11%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.107e-01	1.0000	370.0	10.89%	5348.1	11.56%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.095e-01	1.0000	523.0	15.39%	7481.2	16.17%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.047e-01	1.0000	15.0	0.44%	274.3	0.59%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.024e-01	1.0000	951.0	27.98%	13408.0	28.97%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-1.018e-01	1.0000	731.0	21.51%	10375.2	22.42%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.013e-01	1.0000	329.0	9.68%	4786.2	10.34%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-9.720e-02	1.0000	1058.0	31.13%	14888.7	32.17%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-9.583e-02	1.0000	620.0	18.24%	8849.7	19.12%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-8.981e-02	1.0000	341.0	10.03%	4970.1	10.74%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-8.636e-02	1.0000	2198.0	64.67%	30441.5	65.78%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.594e-02	1.0000	867.0	25.51%	12283.2	26.54%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-8.450e-02	1.0000	49.0	1.44%	803.9	1.74%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-8.023e-02	1.0000	1059.0	31.16%	14940.0	32.28%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-8.020e-02	1.0000	1358.0	39.95%	19038.6	41.14%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-7.597e-02	1.0000	652.0	19.18%	9331.1	20.16%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-7.589e-02	1.0000	1520.0	44.72%	21262.5	45.95%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-7.438e-02	1.0000	1863.0	54.81%	25934.3	56.04%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-7.388e-02	1.0000	3.0	0.09%	79.1	0.17%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.216e-02	1.0000	107.0	3.15%	1666.3	3.60%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-7.119e-02	1.0000	21.0	0.62%	383.7	0.83%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.900e-02	1.0000	85.0	2.50%	1348.6	2.91%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-6.850e-02	1.0000	725.0	21.33%	10360.5	22.39%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-6.742e-02	1.0000	2094.0	61.61%	29083.0	62.85%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.479e-02	1.0000	63.0	1.85%	1027.2	2.22%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-6.078e-02	1.0000	75.0	2.21%	1209.9	2.61%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-5.568e-02	1.0000	58.0	1.71%	961.2	2.08%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-5.194e-02	1.0000	915.0	26.92%	13034.4	28.17%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.790e-02	1.0000	123.0	3.62%	1930.0	4.17%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-4.634e-02	1.0000	1009.0	29.69%	14350.2	31.01%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-4.530e-02	1.0000	893.0	26.27%	12753.3	27.56%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.985e-02	1.0000	731.0	21.51%	10529.8	22.75%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.558e-02	1.0000	209.0	6.15%	3199.2	6.91%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.053e-02	1.0000	217.0	6.38%	3328.0	7.19%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.994e-02	1.0000	528.0	15.53%	7737.4	16.72%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.886e-02	1.0000	12.0	0.35%	264.9	0.57%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.722e-02	1.0000	73.0	2.15%	1227.1	2.65%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-2.132e-02	1.0000	1232.0	36.25%	17547.9	37.92%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.114e-02	1.0000	398.0	11.71%	5947.2	12.85%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.096e-02	1.0000	1989.0	58.52%	27866.8	60.22%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.046e-02	1.0000	647.0	19.04%	9453.4	20.43%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.856e-02	1.0000	842.0	24.77%	12183.1	26.33%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.822e-02	1.0000	302.0	8.88%	4596.8	9.93%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.726e-02	1.0000	949.0	27.92%	13677.6	29.56%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.505e-02	1.0000	450.0	13.24%	6721.4	14.52%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.393e-02	1.0000	1039.0	30.57%	14953.8	32.31%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.325e-02	1.0000	500.0	14.71%	7443.0	16.08%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.258e-02	1.0000	338.0	9.94%	5147.9	11.12%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.250e-02	1.0000	114.0	3.35%	1889.4	4.08%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.226e-02	1.0000	1052.0	30.95%	15151.7	32.74%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.200e-02	1.0000	138.0	4.06%	2249.4	4.86%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.046e-02	1.0000	824.0	24.24%	12011.2	25.96%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.430e-03	1.0000	108.0	3.18%	1816.1	3.92%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.430e-03	1.0000	108.0	3.18%	1816.1	3.92%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-9.031e-03	1.0000	2292.0	67.43%	32068.6	69.30%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-8.806e-03	1.0000	288.0	8.47%	4462.5	9.64%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.789e-03	1.0000	42.0	1.24%	805.9	1.74%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-7.626e-03	1.0000	631.0	18.56%	9351.9	20.21%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-7.553e-03	1.0000	1373.0	40.39%	19638.5	42.44%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-7.093e-03	1.0000	4.0	0.12%	143.1	0.31%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-7.092e-03	1.0000	1143.0	33.63%	16484.8	35.62%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-7.019e-03	1.0000	390.0	11.47%	5947.2	12.85%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-6.502e-03	1.0000	130.0	3.82%	2169.7	4.69%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-5.776e-03	1.0000	788.0	23.18%	11584.4	25.03%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-5.521e-03	1.0000	104.0	3.06%	1786.7	3.86%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-5.519e-03	1.0000	1040.0	30.60%	15094.1	32.62%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-5.375e-03	1.0000	1108.0	32.60%	16038.8	34.66%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.716e-03	1.0000	296.0	8.71%	4631.6	10.01%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.575e-03	1.0000	484.0	14.24%	7329.3	15.84%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-4.147e-03	1.0000	1045.0	30.74%	15200.8	32.85%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.578e-03	1.0000	726.0	21.36%	10772.4	23.28%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-3.475e-03	1.0000	897.0	26.39%	13166.6	28.45%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-3.057e-03	1.0000	65.0	1.91%	1211.6	2.62%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.684e-03	1.0000	753.0	22.15%	11183.0	24.17%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-2.659e-03	1.0000	1162.0	34.19%	16874.8	36.47%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.580e-03	1.0000	142.0	4.18%	2405.7	5.20%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.220e-03	1.0000	392.0	11.53%	6081.3	13.14%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.743e-03	1.0000	485.0	14.27%	7436.1	16.07%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.574e-03	1.0000	71.0	2.09%	1335.9	2.89%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.520e-03	1.0000	628.0	18.48%	9482.1	20.49%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.272e-03	1.0000	1052.0	30.95%	15439.0	33.36%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.031e-03	1.0000	228.0	6.71%	3748.8	8.10%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.022e-03	1.0000	77.0	2.27%	1449.6	3.13%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-9.480e-04	1.0000	21.0	0.62%	518.2	1.12%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-9.210e-04	1.0000	587.0	17.27%	8949.9	19.34%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-7.870e-04	1.0000	491.0	14.45%	7593.8	16.41%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-7.850e-04	1.0000	1042.0	30.66%	15354.1	33.18%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-7.480e-04	1.0000	937.0	27.57%	13897.3	30.03%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-6.020e-04	1.0000	1368.0	40.25%	19887.6	42.98%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-3.730e-04	1.0000	970.0	28.54%	14430.8	31.18%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-3.360e-04	1.0000	502.0	14.77%	7823.1	16.91%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-2.370e-04	1.0000	948.0	27.89%	14168.7	30.62%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.710e-04	1.0000	1452.0	42.72%	21175.3	45.76%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.400e-04	1.0000	438.0	12.89%	6968.3	15.06%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.110e-04	1.0000	1044.0	30.71%	15582.9	33.67%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-8.800e-05	1.0000	554.0	16.30%	8679.9	18.76%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-6.500e-05	1.0000	2179.0	64.11%	31096.6	67.20%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.000e-05	1.0000	749.0	22.04%	11508.8	24.87%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.900e-05	1.0000	90.0	2.65%	1783.6	3.85%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-4.000e-05	1.0000	1278.0	37.60%	18926.7	40.90%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.700e-05	1.0000	32.0	0.94%	806.9	1.74%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.600e-05	1.0000	115.0	3.38%	2198.5	4.75%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.100e-05	1.0000	2097.0	61.69%	30070.0	64.98%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.200e-05	1.0000	1836.0	54.02%	26651.5	57.59%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-5.000e-06	1.0000	1508.0	44.37%	22281.9	48.15%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-4.000e-06	1.0000	101.0	2.97%	2055.5	4.44%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.000e-06	1.0000	1047.0	30.80%	16013.5	34.60%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.000e-06	1.0000	551.0	16.21%	8991.6	19.43%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.000e-06	1.0000	546.0	16.06%	8922.7	19.28%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-0.000e+00	1.0000	1646.0	48.43%	24356.2	52.63%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	784.0	23.07%	12404.8	26.81%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-0.000e+00	1.0000	1134.0	33.36%	17353.8	37.50%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-0.000e+00	1.0000	750.0	22.07%	11931.7	25.78%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-0.000e+00	1.0000	1029.0	30.27%	15896.9	34.35%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-0.000e+00	1.0000	1807.0	53.16%	26616.1	57.52%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	1297.0	38.16%	19660.8	42.49%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-0.000e+00	1.0000	938.0	27.60%	14671.7	31.70%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-0.000e+00	1.0000	1290.0	37.95%	19602.4	42.36%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	1841.0	54.16%	27135.4	58.64%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	2021.0	59.46%	29567.9	63.89%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	131.0	3.85%	2721.6	5.88%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-0.000e+00	1.0000	1621.0	47.69%	24213.3	52.32%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-0.000e+00	1.0000	47.0	1.38%	1272.7	2.75%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-0.000e+00	1.0000	360.0	10.59%	6342.1	13.70%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	166.0	4.88%	3339.5	7.22%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	160.0	4.71%	3252.5	7.03%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	68.0	2.00%	1705.1	3.68%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-0.000e+00	1.0000	2888.0	84.97%	40843.4	88.26%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-0.000e+00	1.0000	232.0	6.83%	4464.7	9.65%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-0.000e+00	1.0000	1163.0	34.22%	18161.5	39.25%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	2890.0	85.03%	41087.5	88.79%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	2394.0	70.43%	35211.3	76.09%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	2406.0	70.79%	35399.9	76.50%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-0.000e+00	1.0000	121.0	3.56%	3076.5	6.65%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-0.000e+00	1.0000	2406.0	70.79%	35587.0	76.90%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	926.0	27.24%	19219.5	41.53%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	0.000e+00	1.0000	650.0	19.12%	11953.8	25.83%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	1012.0	29.77%	17474.0	37.76%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	0.000e+00	1.0000	592.0	17.42%	12038.0	26.01%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	408.0	12.00%	7931.2	17.14%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	1096.0	32.24%	23491.4	50.76%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	651.0	19.15%	14215.5	30.72%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	21.3	0.05%