Information for 1-ARCAGATGGH (Motif 1)

T C G A T C G A A G T C C G T A A C T G C G T A C G A T A C T G A C T G G A T C
Reverse Opposite:
C T A G T G A C G T A C C G T A A C G T G T A C A C G T A C T G A G C T A G C T
p-value:1e-461
log p-value:-1.062e+03
Information Content per bp:1.754
Number of Target Sequences with motif3550.0
Percentage of Target Sequences with motif28.94%
Number of Background Sequences with motif4861.7
Percentage of Background Sequences with motif13.12%
Average Position of motif in Targets430.8 +/- 280.2bp
Average Position of motif in Background401.2 +/- 244.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NEUROG2(var.2)/MA1642.1/Jaspar

Match Rank:1
Score:0.96
Offset:-2
Orientation:forward strand
Alignment:--ARCAGATGGH-
GGAACAGATGGCA
 A C G T A C G T T C G A T C G A A G T C C G T A A C T G C G T A C G A T A C T G A C T G G A T C A C G T
C T A G C T A G T C G A T G C A T A G C T C G A A C T G T G C A G A C T C A T G A C T G A G T C T G C A

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:ARCAGATGGH
AACAGATGGT
 T C G A T C G A A G T C C G T A A C T G C G T A C G A T A C T G A C T G G A T C
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

NEUROD1/MA1109.1/Jaspar

Match Rank:3
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-ARCAGATGGH--
GGACAGATGGCAG
 A C G T T C G A T C G A A G T C C G T A A C T G C G T A C G A T A C T G A C T G G A T C A C G T A C G T
C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:4
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:ARCAGATGGH
AACAKATGGY
 T C G A T C G A A G T C C G T A A C T G C G T A C G A T A C T G A C T G G A T C
C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:ARCAGATGGH
AACAGATGGC
 T C G A T C G A A G T C C G T A A C T G C G T A C G A T A C T G A C T G G A T C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

Bhlha15/MA0607.1/Jaspar

Match Rank:6
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:ARCAGATGGH
-ACATATGG-
 T C G A T C G A A G T C C G T A A C T G C G T A C G A T A C T G A C T G G A T C
A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G A C G T

Atoh1/MA0461.2/Jaspar

Match Rank:7
Score:0.88
Offset:0
Orientation:forward strand
Alignment:ARCAGATGGH
AACATATGTT
 T C G A T C G A A G T C C G T A A C T G C G T A C G A T A C T G A C T G G A T C
T C G A T G C A T G A C T C G A C A G T G T C A C G A T C A T G A C G T G A C T

HAND2/MA1638.1/Jaspar

Match Rank:8
Score:0.88
Offset:0
Orientation:forward strand
Alignment:ARCAGATGGH
ACCAGATGGC
 T C G A T C G A A G T C C G T A A C T G C G T A C G A T A C T G A C T G G A T C
C T G A T G A C A T G C T C G A A C T G T C G A A G C T T C A G A C T G G A T C

TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer

Match Rank:9
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:ARCAGATGGH
DMCAGATGKS
 T C G A T C G A A G T C C G T A A C T G C G T A C G A T A C T G A C T G G A T C
C G T A T G A C A G T C C G T A A C T G G T C A A C G T A C T G A C G T A T G C

Twist2/MA0633.1/Jaspar

Match Rank:10
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:ARCAGATGGH
NACATATGGN
 T C G A T C G A A G T C C G T A A C T G C G T A C G A T A C T G A C T G G A T C
G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T