Information for 7-GCTGCTAAAT (Motif 7)

T C A G A G T C C G A T A C T G G A T C G A C T C T G A C T G A C G T A G C A T
Reverse Opposite:
C G T A G C A T A G C T G A C T C T G A C T A G G T A C C G T A T C A G A G T C
p-value:1e-144
log p-value:-3.318e+02
Information Content per bp:1.643
Number of Target Sequences with motif3986.0
Percentage of Target Sequences with motif32.50%
Number of Background Sequences with motif8309.8
Percentage of Background Sequences with motif22.42%
Average Position of motif in Targets449.4 +/- 311.4bp
Average Position of motif in Background402.9 +/- 249.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCTGCTAAAT
GGTGCCAAGT
 T C A G A G T C C G A T A C T G G A T C G A C T C T G A C T G A C G T A G C A T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCTGCTAAAT-
NNTGCCAAGNN
 T C A G A G T C C G A T A C T G G A T C G A C T C T G A C T G A C G T A G C A T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCTAAAT
AGGTGTTAAT-
 A C G T T C A G A G T C C G A T A C T G G A T C G A C T C T G A C T G A C G T A G C A T
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCTGCTAAAT
CGTGCCAAG-
 T C A G A G T C C G A T A C T G G A T C G A C T C T G A C T G A C G T A G C A T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCTGCTAAAT---
CAATTGCAAAAATAT
 A C G T A C G T T C A G A G T C C G A T A C T G G A T C G A C T C T G A C T G A C G T A G C A T A C G T A C G T A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCTGCTAAAT
AAGGTGTKAA--
 A C G T A C G T T C A G A G T C C G A T A C T G G A T C G A C T C T G A C T G A C G T A G C A T
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCTGCTAAAT--
TATGCWAATBAV
 T C A G A G T C C G A T A C T G G A T C G A C T C T G A C T G A C G T A G C A T A C G T A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCTGCTAAAT
DAGGTGTBAA--
 A C G T A C G T T C A G A G T C C G A T A C T G G A T C G A C T C T G A C T G A C G T A G C A T
C T A G C T G A T C A G A T C G A G C T C A T G G A C T A G T C C T G A T G C A A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTGCTAAAT
-TTGCCAAG-
 T C A G A G T C C G A T A C T G G A T C G A C T C T G A C T G A C G T A G C A T
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GCTGCTAAAT--
NCCGTTGCTANGNGN
 A C G T A C G T A C G T T C A G A G T C C G A T A C T G G A T C G A C T C T G A C T G A C G T A G C A T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G