Information for 8-TGCAGCCTGC (Motif 8)

C G A T C T A G T A G C G C T A A C T G A T G C T G A C C G A T T A C G A G T C
Reverse Opposite:
T C A G A T G C G C T A A C T G T A C G G T A C C G A T A T C G A G T C G C T A
p-value:1e-142
log p-value:-3.280e+02
Information Content per bp:1.701
Number of Target Sequences with motif5256.0
Percentage of Target Sequences with motif42.85%
Number of Background Sequences with motif11814.2
Percentage of Background Sequences with motif31.87%
Average Position of motif in Targets455.9 +/- 323.9bp
Average Position of motif in Background402.1 +/- 258.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.39
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TGCAGCCTGC
-BCAGACWA-
 C G A T C T A G T A G C G C T A A C T G A T G C T G A C C G A T T A C G A G T C
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGCAGCCTGC---
TGGCAGNCTGCCAG
 A C G T C G A T C T A G T A G C G C T A A C T G A T G C T G A C C G A T T A C G A G T C A C G T A C G T A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TGCAGCCTGC
--CTGTCTGG
 C G A T C T A G T A G C G C T A A C T G A T G C T G A C C G A T T A C G A G T C
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGCAGCCTGC
VBSYGTCTGG
 C G A T C T A G T A G C G C T A A C T G A T G C T G A C C G A T T A C G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

CTCFL/MA1102.2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGCAGCCTGC-
GCGCCCCCTGNN
 A C G T C G A T C T A G T A G C G C T A A C T G A T G C T G A C C G A T T A C G A G T C A C G T
T A C G A G T C C T A G G T A C T A G C T A G C A G T C T A G C A C G T T A C G A T G C A G C T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGCAGCCTGC
--CAGCC---
 C G A T C T A G T A G C G C T A A C T G A T G C T G A C C G A T T A C G A G T C
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGCAGCCTGC
CACAGN----
 C G A T C T A G T A G C G C T A A C T G A T G C T G A C C G A T T A C G A G T C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGCAGCCTGC
NGAAGC----
 C G A T C T A G T A G C G C T A A C T G A T G C T G A C C G A T T A C G A G T C
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TGCAGCCTGC----
---NNCCTGCTGNG
 C G A T C T A G T A G C G C T A A C T G A T G C T G A C C G A T T A C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G

ZNF460/MA1596.1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TGCAGCCTGC----
GCCTCAGCCTCCCGAG
 A C G T A C G T C G A T C T A G T A G C G C T A A C T G A T G C T G A C C G A T T A C G A G T C A C G T A C G T A C G T A C G T
T C A G A T G C A T G C A G C T A T G C T G C A C T A G A G T C A T G C C A G T A T G C A T G C A G T C T C A G T C G A T C A G