Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 12265)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 37063)	% of Background Sequences with Motif
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-379	-8.741e+02	0.0000	3633.0	29.62%	5489.0	14.81%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-374	-8.618e+02	0.0000	4138.0	33.74%	6701.6	18.08%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-368	-8.475e+02	0.0000	3999.0	32.60%	6411.9	17.30%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-355	-8.185e+02	0.0000	1344.0	10.96%	1103.5	2.98%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-355	-8.183e+02	0.0000	4460.0	36.36%	7614.9	20.54%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-350	-8.070e+02	0.0000	2869.0	23.39%	3968.2	10.71%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-349	-8.047e+02	0.0000	1252.0	10.21%	981.0	2.65%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-332	-7.653e+02	0.0000	3938.0	32.11%	6505.4	17.55%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-327	-7.541e+02	0.0000	2296.0	18.72%	2898.1	7.82%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-309	-7.117e+02	0.0000	4361.0	35.56%	7713.1	20.81%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-301	-6.935e+02	0.0000	4701.0	38.33%	8640.7	23.31%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-258	-5.943e+02	0.0000	1345.0	10.97%	1393.7	3.76%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-245	-5.662e+02	0.0000	4612.0	37.60%	8894.8	24.00%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-236	-5.452e+02	0.0000	6558.0	53.47%	14372.4	38.78%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-232	-5.349e+02	0.0000	2938.0	23.95%	4849.1	13.08%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-223	-5.152e+02	0.0000	1632.0	13.31%	2067.9	5.58%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-213	-4.907e+02	0.0000	8159.0	66.52%	19504.5	52.62%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-206	-4.760e+02	0.0000	1875.0	15.29%	2650.3	7.15%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-203	-4.680e+02	0.0000	2692.0	21.95%	4490.1	12.11%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-186	-4.299e+02	0.0000	4271.0	34.82%	8585.7	23.16%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-180	-4.151e+02	0.0000	5407.0	44.08%	11750.8	31.70%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-165	-3.821e+02	0.0000	3982.0	32.47%	8048.8	21.71%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-159	-3.662e+02	0.0000	1644.0	13.40%	2444.1	6.59%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-156	-3.597e+02	0.0000	8884.0	72.43%	22593.8	60.96%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-150	-3.463e+02	0.0000	7499.0	61.14%	18300.2	49.37%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-136	-3.147e+02	0.0000	8546.0	69.68%	21792.2	58.79%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-121	-2.801e+02	0.0000	7877.0	64.22%	19918.1	53.74%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-105	-2.428e+02	0.0000	3041.0	24.79%	6296.6	16.99%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-99	-2.283e+02	0.0000	7649.0	62.36%	19599.8	52.88%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-97	-2.234e+02	0.0000	7290.0	59.44%	18534.5	50.00%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-92	-2.139e+02	0.0000	1218.0	9.93%	1967.3	5.31%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-72	-1.677e+02	0.0000	3631.0	29.60%	8356.7	22.55%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-58	-1.348e+02	0.0000	6110.0	49.82%	15769.2	42.54%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-57	-1.326e+02	0.0000	2467.0	20.11%	5463.0	14.74%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-52	-1.205e+02	0.0000	506.0	4.13%	718.5	1.94%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-49	-1.147e+02	0.0000	8182.0	66.71%	22309.8	60.19%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-49	-1.133e+02	0.0000	1594.0	13.00%	3315.6	8.95%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-46	-1.062e+02	0.0000	4845.0	39.50%	12349.4	33.32%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-43	-1.013e+02	0.0000	2039.0	16.62%	4554.1	12.29%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-42	-9.758e+01	0.0000	441.0	3.60%	647.0	1.75%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-34	-7.969e+01	0.0000	11667.0	95.12%	34225.9	92.34%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-32	-7.483e+01	0.0000	4694.0	38.27%	12279.4	33.13%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-32	-7.455e+01	0.0000	1472.0	12.00%	3260.6	8.80%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-31	-7.282e+01	0.0000	3945.0	32.16%	10133.2	27.34%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-31	-7.233e+01	0.0000	388.0	3.16%	609.9	1.65%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-30	-7.027e+01	0.0000	2437.0	19.87%	5903.6	15.93%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-30	-6.999e+01	0.0000	563.0	4.59%	1011.9	2.73%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-28	-6.581e+01	0.0000	1201.0	9.79%	2618.5	7.06%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-28	-6.547e+01	0.0000	2097.0	17.10%	5016.2	13.53%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-26	-6.042e+01	0.0000	4438.0	36.18%	11727.5	31.64%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-24	-5.741e+01	0.0000	2022.0	16.49%	4892.5	13.20%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-24	-5.657e+01	0.0000	3803.0	31.01%	9937.8	26.81%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-24	-5.560e+01	0.0000	3163.0	25.79%	8113.9	21.89%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-23	-5.465e+01	0.0000	1523.0	12.42%	3561.2	9.61%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-23	-5.410e+01	0.0000	2630.0	21.44%	6622.7	17.87%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-22	-5.172e+01	0.0000	7855.0	64.04%	22130.2	59.70%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-21	-5.062e+01	0.0000	2518.0	20.53%	6350.9	17.13%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-21	-4.962e+01	0.0000	2260.0	18.43%	5639.4	15.21%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-20	-4.765e+01	0.0000	4089.0	33.34%	10900.9	29.41%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-20	-4.706e+01	0.0000	6749.0	55.03%	18828.8	50.80%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-20	-4.650e+01	0.0000	4168.0	33.98%	11149.5	30.08%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-20	-4.638e+01	0.0000	3537.0	28.84%	9318.0	25.14%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-20	-4.618e+01	0.0000	4237.0	34.55%	11356.9	30.64%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-18	-4.330e+01	0.0000	4919.0	40.11%	13412.1	36.18%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-18	-4.328e+01	0.0000	5485.0	44.72%	15094.4	40.72%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-18	-4.316e+01	0.0000	3132.0	25.54%	8199.2	22.12%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-17	-4.053e+01	0.0000	1334.0	10.88%	3188.7	8.60%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-17	-4.020e+01	0.0000	2665.0	21.73%	6907.9	18.64%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-17	-3.987e+01	0.0000	2773.0	22.61%	7220.1	19.48%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-16	-3.873e+01	0.0000	117.0	0.95%	144.3	0.39%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-16	-3.837e+01	0.0000	2919.0	23.80%	7661.7	20.67%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-16	-3.757e+01	0.0000	6564.0	53.52%	18445.8	49.76%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-15	-3.543e+01	0.0000	7607.0	62.02%	21665.4	58.45%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-15	-3.491e+01	0.0000	1893.0	15.43%	4799.6	12.95%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-14	-3.447e+01	0.0000	3062.0	24.97%	8136.0	21.95%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-14	-3.420e+01	0.0000	1283.0	10.46%	3117.4	8.41%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-14	-3.411e+01	0.0000	7410.0	60.42%	21089.5	56.90%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-14	-3.288e+01	0.0000	4683.0	38.18%	12909.8	34.83%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-13	-3.153e+01	0.0000	4526.0	36.90%	12472.6	33.65%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-13	-3.145e+01	0.0000	1404.0	11.45%	3482.1	9.39%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-13	-3.132e+01	0.0000	2486.0	20.27%	6533.4	17.63%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-13	-3.011e+01	0.0000	4198.0	34.23%	11533.6	31.12%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-12	-2.972e+01	0.0000	77.0	0.63%	88.8	0.24%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e-12	-2.954e+01	0.0000	3429.0	27.96%	9290.1	25.06%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-12	-2.865e+01	0.0000	848.0	6.91%	1997.7	5.39%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-12	-2.833e+01	0.0000	9502.0	77.47%	27689.8	74.70%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-11	-2.578e+01	0.0000	5640.0	45.98%	15919.0	42.95%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-10	-2.511e+01	0.0000	1713.0	13.97%	4434.6	11.96%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-10	-2.471e+01	0.0000	7578.0	61.79%	21814.8	58.85%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-10	-2.384e+01	0.0000	483.0	3.94%	1075.6	2.90%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-10	-2.365e+01	0.0000	1023.0	8.34%	2528.3	6.82%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-10	-2.335e+01	0.0000	3085.0	25.15%	8412.6	22.70%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-9	-2.295e+01	0.0000	864.0	7.04%	2101.2	5.67%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-9	-2.257e+01	0.0000	4899.0	39.94%	13781.9	37.18%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-9	-2.250e+01	0.0000	373.0	3.04%	803.0	2.17%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-9	-2.246e+01	0.0000	76.0	0.62%	101.8	0.27%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-9	-2.207e+01	0.0000	5911.0	48.19%	16825.7	45.39%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-9	-2.199e+01	0.0000	872.0	7.11%	2135.0	5.76%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-9	-2.138e+01	0.0000	1380.0	11.25%	3553.4	9.59%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-9	-2.137e+01	0.0000	2259.0	18.42%	6058.9	16.35%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-9	-2.109e+01	0.0000	4997.0	40.74%	14111.7	38.07%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-8	-2.055e+01	0.0000	3664.0	29.87%	10172.2	27.44%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-8	-1.997e+01	0.0000	579.0	4.72%	1363.9	3.68%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-7	-1.837e+01	0.0000	712.0	5.81%	1740.1	4.69%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-7	-1.810e+01	0.0000	6909.0	56.33%	19952.6	53.83%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-7	-1.713e+01	0.0000	1329.0	10.84%	3478.8	9.39%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-7	-1.703e+01	0.0000	441.0	3.60%	1024.5	2.76%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-7	-1.668e+01	0.0000	4663.0	38.02%	13236.8	35.71%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-7	-1.637e+01	0.0000	1374.0	11.20%	3619.3	9.76%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-6	-1.576e+01	0.0000	6057.0	49.38%	17445.3	47.07%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-6	-1.560e+01	0.0000	803.0	6.55%	2026.3	5.47%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-6	-1.475e+01	0.0000	1083.0	8.83%	2823.5	7.62%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-6	-1.437e+01	0.0000	625.0	5.10%	1551.4	4.19%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-6	-1.437e+01	0.0000	625.0	5.10%	1551.4	4.19%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-6	-1.387e+01	0.0000	3363.0	27.42%	9461.9	25.53%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-5	-1.356e+01	0.0000	4006.0	32.66%	11375.3	30.69%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-5	-1.348e+01	0.0000	1242.0	10.13%	3297.2	8.90%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-5	-1.283e+01	0.0000	11052.0	90.11%	32926.8	88.83%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-5	-1.271e+01	0.0000	1109.0	9.04%	2933.7	7.91%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-5	-1.267e+01	0.0000	2232.0	18.20%	6174.5	16.66%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-5	-1.225e+01	0.0000	810.0	6.60%	2096.7	5.66%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-5	-1.217e+01	0.0000	585.0	4.77%	1470.7	3.97%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-5	-1.214e+01	0.0000	2527.0	20.60%	7051.9	19.03%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-5	-1.210e+01	0.0000	4054.0	33.05%	11565.6	31.20%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-5	-1.172e+01	0.0000	2090.0	17.04%	5785.3	15.61%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-4	-1.123e+01	0.0000	908.0	7.40%	2390.1	6.45%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-4	-1.089e+01	0.0001	1201.0	9.79%	3232.3	8.72%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-4	-1.082e+01	0.0001	4057.0	33.08%	11618.5	31.35%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-4	-1.073e+01	0.0001	5225.0	42.60%	15115.9	40.78%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-4	-1.055e+01	0.0001	1749.0	14.26%	4823.1	13.01%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-4	-1.038e+01	0.0001	2399.0	19.56%	6727.4	18.15%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-4	-1.031e+01	0.0001	6653.0	54.24%	19438.5	52.44%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-4	-9.725e+00	0.0002	1585.0	12.92%	4368.7	11.79%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-4	-9.717e+00	0.0002	1373.0	11.19%	3754.3	10.13%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-3	-8.937e+00	0.0004	857.0	6.99%	2289.1	6.18%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-3	-8.830e+00	0.0005	5341.0	43.55%	15540.6	41.93%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-3	-8.335e+00	0.0008	1561.0	12.73%	4336.9	11.70%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-3	-8.197e+00	0.0009	512.0	4.17%	1326.8	3.58%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-3	-8.104e+00	0.0010	2281.0	18.60%	6453.4	17.41%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-3	-8.047e+00	0.0010	1213.0	9.89%	3333.2	8.99%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-3	-7.777e+00	0.0013	441.0	3.60%	1134.0	3.06%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-3	-7.716e+00	0.0014	2533.0	20.65%	7210.5	19.45%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-7.662e+00	0.0014	2877.0	23.46%	8230.6	22.21%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-7.640e+00	0.0015	3247.0	26.47%	9329.9	25.17%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-3	-7.593e+00	0.0015	991.0	8.08%	2703.4	7.29%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-3	-7.572e+00	0.0016	7108.0	57.95%	20935.4	56.48%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-3	-7.480e+00	0.0017	2744.0	22.37%	7843.4	21.16%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-3	-7.458e+00	0.0017	4246.0	34.62%	12317.0	33.23%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-7.419e+00	0.0018	1028.0	8.38%	2814.7	7.59%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-3	-7.052e+00	0.0025	2711.0	22.10%	7762.3	20.94%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-3	-6.954e+00	0.0028	2528.0	20.61%	7224.8	19.49%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-2	-6.841e+00	0.0031	421.0	3.43%	1093.2	2.95%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-2	-6.620e+00	0.0038	4075.0	33.22%	11843.6	31.95%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-6.540e+00	0.0041	6225.0	50.75%	18312.6	49.41%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-6.485e+00	0.0043	2324.0	18.95%	6639.5	17.91%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-6.433e+00	0.0045	5639.0	45.98%	16549.9	44.65%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-6.213e+00	0.0056	559.0	4.56%	1495.9	4.04%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-2	-6.181e+00	0.0058	3702.0	30.18%	10749.4	29.00%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-2	-6.137e+00	0.0060	4130.0	33.67%	12031.2	32.46%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-2	-5.727e+00	0.0090	793.0	6.47%	2178.8	5.88%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-2	-5.235e+00	0.0146	863.0	7.04%	2394.8	6.46%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-2	-4.844e+00	0.0214	5958.0	48.58%	17600.4	47.48%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-4.842e+00	0.0214	9847.0	80.29%	29431.6	79.40%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-4.760e+00	0.0230	1071.0	8.73%	3015.0	8.13%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-2	-4.618e+00	0.0263	1761.0	14.36%	5051.5	13.63%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-2	-4.615e+00	0.0263	5151.0	42.00%	15181.6	40.96%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-4.483e+00	0.0298	228.0	1.86%	590.1	1.59%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-4.404e+00	0.0320	2481.0	20.23%	7197.7	19.42%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-1	-4.166e+00	0.0404	6196.0	50.52%	18362.8	49.54%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-4.095e+00	0.0431	1207.0	9.84%	3438.2	9.28%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-4.070e+00	0.0439	226.0	1.84%	591.1	1.59%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-4.039e+00	0.0451	4619.0	37.66%	13617.1	36.74%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-4.017e+00	0.0458	2314.0	18.87%	6720.1	18.13%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.895e+00	0.0514	425.0	3.47%	1162.5	3.14%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.863e+00	0.0528	927.0	7.56%	2624.7	7.08%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-3.784e+00	0.0568	880.0	7.17%	2489.3	6.72%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-3.776e+00	0.0569	1181.0	9.63%	3374.3	9.10%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-3.727e+00	0.0595	880.0	7.17%	2491.3	6.72%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.505e+00	0.0739	608.0	4.96%	1703.3	4.60%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.461e+00	0.0768	6752.0	55.05%	20093.5	54.21%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.456e+00	0.0768	1367.0	11.15%	3937.2	10.62%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-3.453e+00	0.0768	1089.0	8.88%	3116.3	8.41%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.343e+00	0.0849	608.0	4.96%	1708.9	4.61%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-3.342e+00	0.0849	395.0	3.22%	1089.3	2.94%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-3.251e+00	0.0921	427.0	3.48%	1184.9	3.20%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-3.212e+00	0.0952	9875.0	80.51%	29607.4	79.88%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-1	-2.669e+00	0.1630	1323.0	10.79%	3845.8	10.38%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-2.603e+00	0.1734	563.0	4.59%	1601.2	4.32%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.577e+00	0.1770	4657.0	37.97%	13840.8	37.34%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.551e+00	0.1806	1684.0	13.73%	4926.5	13.29%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-2.528e+00	0.1838	574.0	4.68%	1636.5	4.42%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-2.512e+00	0.1859	1267.0	10.33%	3687.5	9.95%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-2.477e+00	0.1916	1660.0	13.53%	4859.8	13.11%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.368e+00	0.2125	1771.0	14.44%	5197.2	14.02%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-2.330e+00	0.2196	390.0	3.18%	1103.6	2.98%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.267e+00	0.2326	1059.0	8.63%	3082.2	8.32%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.235e+00	0.2391	2589.0	21.11%	7654.3	20.65%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.203e+00	0.2455	1433.0	11.68%	4199.3	11.33%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.142e+00	0.2596	307.0	2.50%	866.6	2.34%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.037e+00	0.2871	1546.0	12.60%	4547.7	12.27%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.035e+00	0.2871	1288.0	10.50%	3777.8	10.19%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.022e+00	0.2884	226.0	1.84%	633.2	1.71%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.022e+00	0.2884	32.0	0.26%	78.4	0.21%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.987e+00	0.2958	877.0	7.15%	2556.8	6.90%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.809e+00	0.3516	2697.0	21.99%	8014.0	21.62%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.800e+00	0.3531	463.0	3.77%	1337.6	3.61%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.741e+00	0.3729	4604.0	37.54%	13761.4	37.13%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-1.599e+00	0.4276	196.0	1.60%	557.2	1.50%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.591e+00	0.4288	2071.0	16.89%	6155.0	16.61%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.589e+00	0.4288	1790.0	14.59%	5311.1	14.33%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.520e+00	0.4563	105.0	0.86%	293.7	0.79%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.475e+00	0.4749	270.0	2.20%	779.2	2.10%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.384e+00	0.5176	2322.0	18.93%	6928.9	18.69%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.331e+00	0.5433	9.0	0.07%	22.0	0.06%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.324e+00	0.5444	400.0	3.26%	1171.1	3.16%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.318e+00	0.5452	1186.0	9.67%	3522.9	9.50%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.297e+00	0.5541	1913.0	15.60%	5707.0	15.40%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.251e+00	0.5776	1439.0	11.73%	4287.0	11.57%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.238e+00	0.5827	552.0	4.50%	1629.8	4.40%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.201e+00	0.6016	8402.0	68.50%	25308.4	68.28%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.188e+00	0.6067	9730.0	79.33%	29333.5	79.14%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.171e+00	0.6145	37.0	0.30%	102.3	0.28%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.157e+00	0.6207	2256.0	18.39%	6754.8	18.22%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-9.119e-01	0.7892	566.0	4.61%	1692.3	4.57%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-9.091e-01	0.7892	3467.0	28.27%	10439.9	28.17%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-8.967e-01	0.7942	122.0	0.99%	360.3	0.97%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-8.767e-01	0.8067	4863.0	39.65%	14660.9	39.55%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-8.541e-01	0.8215	2357.0	19.22%	7097.6	19.15%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-8.357e-01	0.8331	5557.0	45.31%	16764.8	45.23%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-8.119e-01	0.8494	1975.0	16.10%	5950.8	16.05%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-8.040e-01	0.8524	10.0	0.08%	28.5	0.08%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.029e-01	0.9390	1242.0	10.13%	3751.8	10.12%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-6.994e-01	0.9390	5577.0	45.47%	16851.6	45.46%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.767e-01	0.9557	68.0	0.55%	205.1	0.55%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-6.450e-01	0.9823	200.0	1.63%	606.1	1.64%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-6.337e-01	0.9893	7733.0	63.05%	23380.7	63.08%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-6.184e-01	1.0000	1239.0	10.10%	3753.7	10.13%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.295e-01	1.0000	588.0	4.79%	1792.7	4.84%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-5.010e-01	1.0000	65.0	0.53%	202.9	0.55%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-4.885e-01	1.0000	705.0	5.75%	2152.0	5.81%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-4.687e-01	1.0000	2425.0	19.77%	7370.2	19.88%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.668e-01	1.0000	981.0	8.00%	2993.4	8.08%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.355e-01	1.0000	260.0	2.12%	803.6	2.17%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.345e-01	1.0000	1282.0	10.45%	3912.7	10.56%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-4.130e-01	1.0000	1953.0	15.92%	5952.8	16.06%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.987e-01	1.0000	839.0	6.84%	2572.1	6.94%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-3.981e-01	1.0000	1706.0	13.91%	5206.4	14.05%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-3.698e-01	1.0000	140.0	1.14%	440.8	1.19%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.588e-01	1.0000	563.0	4.59%	1737.2	4.69%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-3.543e-01	1.0000	3860.0	31.47%	11746.1	31.69%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.454e-01	1.0000	971.0	7.92%	2983.6	8.05%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.111e-01	1.0000	415.0	3.38%	1291.4	3.48%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.887e-01	1.0000	2652.0	21.62%	8106.9	21.87%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.886e-01	1.0000	3163.0	25.79%	9656.3	26.05%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.867e-01	1.0000	1583.0	12.91%	4859.7	13.11%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.655e-01	1.0000	81.0	0.66%	264.2	0.71%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-2.594e-01	1.0000	5398.0	44.01%	16435.3	44.34%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-2.508e-01	1.0000	4780.0	38.97%	14569.9	39.31%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.487e-01	1.0000	234.0	1.91%	742.3	2.00%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-2.358e-01	1.0000	2828.0	23.06%	8659.6	23.36%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-2.024e-01	1.0000	4275.0	34.86%	13062.9	35.24%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.938e-01	1.0000	938.0	7.65%	2917.7	7.87%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.917e-01	1.0000	1907.0	15.55%	5876.7	15.85%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.837e-01	1.0000	4458.0	36.35%	13626.3	36.76%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.718e-01	1.0000	1988.0	16.21%	6131.1	16.54%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.670e-01	1.0000	2315.0	18.87%	7129.9	19.24%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.451e-01	1.0000	198.0	1.61%	645.9	1.74%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.422e-01	1.0000	14.0	0.11%	55.5	0.15%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.321e-01	1.0000	5372.0	43.80%	16425.9	44.32%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.136e-01	1.0000	3244.0	26.45%	9986.9	26.94%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.037e-01	1.0000	1810.0	14.76%	5623.7	15.17%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.028e-01	1.0000	936.0	7.63%	2944.7	7.94%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-9.885e-02	1.0000	4182.0	34.10%	12846.5	34.66%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-8.408e-02	1.0000	287.0	2.34%	939.3	2.53%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-7.648e-02	1.0000	3434.0	28.00%	10595.3	28.59%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-6.781e-02	1.0000	3651.0	29.77%	11264.1	30.39%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-6.555e-02	1.0000	9413.0	76.75%	28659.7	77.32%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-5.992e-02	1.0000	293.0	2.39%	967.2	2.61%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-5.453e-02	1.0000	5431.0	44.28%	16680.4	45.00%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-5.336e-02	1.0000	3701.0	30.18%	11434.3	30.85%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-4.355e-02	1.0000	90.0	0.73%	324.0	0.87%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-4.293e-02	1.0000	5799.0	47.28%	17812.0	48.05%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-4.189e-02	1.0000	605.0	4.93%	1956.3	5.28%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-4.113e-02	1.0000	6714.0	54.74%	20579.0	55.52%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.592e-02	1.0000	4354.0	35.50%	13447.4	36.28%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-3.409e-02	1.0000	26.0	0.21%	109.1	0.29%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-3.186e-02	1.0000	4027.0	32.83%	12462.0	33.62%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.420e-02	1.0000	483.0	3.94%	1591.8	4.29%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.082e-02	1.0000	4695.0	38.28%	14520.1	39.17%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.017e-02	1.0000	59.0	0.48%	229.8	0.62%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.973e-02	1.0000	138.0	1.13%	493.9	1.33%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.654e-02	1.0000	4238.0	34.55%	13147.6	35.47%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.162e-02	1.0000	255.0	2.08%	883.8	2.38%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.041e-02	1.0000	250.0	2.04%	869.7	2.35%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.614e-03	1.0000	704.0	5.74%	2318.0	6.25%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-8.017e-03	1.0000	2661.0	21.70%	8376.4	22.60%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.693e-03	1.0000	1488.0	12.13%	4765.9	12.86%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-6.942e-03	1.0000	3169.0	25.84%	9939.6	26.82%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-6.327e-03	1.0000	3806.0	31.03%	11889.0	32.08%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-6.273e-03	1.0000	4547.0	37.07%	14145.9	38.16%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.214e-03	1.0000	1031.0	8.41%	3358.9	9.06%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-4.896e-03	1.0000	5672.0	46.25%	17571.6	47.41%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-4.175e-03	1.0000	53.0	0.43%	224.6	0.61%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-3.751e-03	1.0000	3882.0	31.65%	12149.9	32.78%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-3.574e-03	1.0000	4714.0	38.43%	14684.1	39.62%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.553e-03	1.0000	1552.0	12.65%	4994.4	13.47%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-2.134e-03	1.0000	3345.0	27.27%	10537.3	28.43%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-2.120e-03	1.0000	2792.0	22.76%	8842.6	23.86%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.542e-03	1.0000	431.0	3.51%	1492.7	4.03%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.542e-03	1.0000	431.0	3.51%	1492.7	4.03%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.454e-03	1.0000	71.0	0.58%	298.7	0.81%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.336e-03	1.0000	903.0	7.36%	2998.2	8.09%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-1.119e-03	1.0000	7585.0	61.84%	23415.1	63.17%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-9.470e-04	1.0000	3806.0	31.03%	11985.5	32.34%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-8.990e-04	1.0000	3780.0	30.82%	11908.2	32.13%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-5.390e-04	1.0000	2118.0	17.27%	6820.0	18.40%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.130e-04	1.0000	1623.0	13.23%	5292.0	14.28%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-3.760e-04	1.0000	710.0	5.79%	2418.7	6.53%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-3.330e-04	1.0000	3611.0	29.44%	11435.2	30.85%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.690e-04	1.0000	7585.0	61.84%	23480.0	63.35%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.520e-04	1.0000	245.0	2.00%	914.9	2.47%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.520e-04	1.0000	1318.0	10.75%	4352.4	11.74%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.440e-04	1.0000	3208.0	26.16%	10212.2	27.55%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-2.380e-04	1.0000	7674.0	62.57%	23752.4	64.08%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.830e-04	1.0000	2375.0	19.36%	7655.4	20.65%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-1.790e-04	1.0000	7343.0	59.87%	22772.8	61.44%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.410e-04	1.0000	358.0	2.92%	1298.7	3.50%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.340e-04	1.0000	4277.0	34.87%	13509.2	36.45%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-6.600e-05	1.0000	3272.0	26.68%	10459.5	28.22%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-5.100e-05	1.0000	1227.0	10.00%	4109.6	11.09%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-4.300e-05	1.0000	6448.0	52.57%	20140.9	54.34%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-4.200e-05	1.0000	6562.0	53.50%	20484.6	55.27%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.600e-05	1.0000	2369.0	19.32%	7717.4	20.82%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.600e-05	1.0000	964.0	7.86%	3302.5	8.91%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.500e-05	1.0000	668.0	5.45%	2350.9	6.34%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.000e-05	1.0000	3050.0	24.87%	9843.2	26.56%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-8.000e-06	1.0000	2080.0	16.96%	6838.7	18.45%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.000e-06	1.0000	165.0	1.35%	684.4	1.85%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.000e-06	1.0000	3821.0	31.15%	12230.3	33.00%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-5.000e-06	1.0000	1726.0	14.07%	5741.2	15.49%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-5.000e-06	1.0000	2271.0	18.52%	7447.8	20.09%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.000e-06	1.0000	3196.0	26.06%	10319.9	27.84%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-4.000e-06	1.0000	4709.0	38.39%	14962.1	40.37%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.000e-06	1.0000	7785.0	63.47%	24246.1	65.41%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.000e-06	1.0000	7310.0	59.60%	22830.0	61.59%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.000e-06	1.0000	3565.0	29.07%	11485.4	30.99%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.000e-06	1.0000	2871.0	23.41%	9352.6	25.23%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.000e-06	1.0000	3897.0	31.77%	12530.6	33.81%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-0.000e+00	1.0000	1306.0	10.65%	4474.0	12.07%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-0.000e+00	1.0000	2405.0	19.61%	7945.2	21.44%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-0.000e+00	1.0000	3200.0	26.09%	10429.6	28.14%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-0.000e+00	1.0000	6989.0	56.98%	21973.1	59.28%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-0.000e+00	1.0000	3109.0	25.35%	10182.6	27.47%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-0.000e+00	1.0000	605.0	4.93%	2242.1	6.05%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-0.000e+00	1.0000	3106.0	25.32%	10189.3	27.49%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-0.000e+00	1.0000	375.0	3.06%	1475.1	3.98%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-0.000e+00	1.0000	5918.0	48.25%	18821.5	50.78%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-0.000e+00	1.0000	1295.0	10.56%	4519.5	12.19%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-0.000e+00	1.0000	511.0	4.17%	1951.8	5.27%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-0.000e+00	1.0000	3078.0	25.10%	10140.8	27.36%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	1324.0	10.79%	4622.5	12.47%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-0.000e+00	1.0000	10497.0	85.58%	32372.1	87.34%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-0.000e+00	1.0000	5034.0	41.04%	16166.6	43.62%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-0.000e+00	1.0000	1071.0	8.73%	3809.2	10.28%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-0.000e+00	1.0000	657.0	5.36%	2456.7	6.63%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-0.000e+00	1.0000	202.0	1.65%	893.5	2.41%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-0.000e+00	1.0000	2600.0	21.20%	8687.9	23.44%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-0.000e+00	1.0000	277.0	2.26%	1166.0	3.15%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-0.000e+00	1.0000	4276.0	34.86%	13894.7	37.49%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	3007.0	24.52%	9991.7	26.96%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-0.000e+00	1.0000	5762.0	46.98%	18449.5	49.77%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-0.000e+00	1.0000	5394.0	43.98%	17371.8	46.87%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-0.000e+00	1.0000	2877.0	23.46%	9643.0	26.02%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-0.000e+00	1.0000	8119.0	66.20%	25554.1	68.94%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-0.000e+00	1.0000	1992.0	16.24%	6859.9	18.51%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-0.000e+00	1.0000	3814.0	31.10%	12587.0	33.96%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	2925.0	23.85%	9827.8	26.51%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	7953.0	64.84%	25108.9	67.74%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-0.000e+00	1.0000	1971.0	16.07%	6836.2	18.44%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-0.000e+00	1.0000	370.0	3.02%	1565.0	4.22%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-0.000e+00	1.0000	1827.0	14.90%	6389.1	17.24%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-0.000e+00	1.0000	580.0	4.73%	2296.0	6.19%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-0.000e+00	1.0000	5880.0	47.94%	18953.2	51.13%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	1608.0	13.11%	5723.6	15.44%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-0.000e+00	1.0000	1017.0	8.29%	3792.9	10.23%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-0.000e+00	1.0000	198.0	1.61%	966.3	2.61%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-0.000e+00	1.0000	1075.0	8.76%	4005.3	10.81%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-0.000e+00	1.0000	344.0	2.80%	1515.7	4.09%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-0.000e+00	1.0000	3385.0	27.60%	11394.0	30.74%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	212.0	1.73%	1031.0	2.78%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-0.000e+00	1.0000	6406.0	52.23%	20677.8	55.79%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-0.000e+00	1.0000	2568.0	20.94%	8879.6	23.96%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-0.000e+00	1.0000	99.0	0.81%	605.1	1.63%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-0.000e+00	1.0000	62.0	0.51%	445.2	1.20%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-0.000e+00	1.0000	6082.0	49.59%	19739.5	53.26%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	0.000e+00	1.0000	2559.0	20.86%	9173.0	24.75%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	0.000e+00	1.0000	2206.0	17.99%	7970.1	21.50%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	0.000e+00	1.0000	3994.0	32.56%	18194.4	49.09%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	0.000e+00	1.0000	4633.0	37.77%	20652.8	55.72%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	1965.0	16.02%	7188.2	19.39%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	446.0	3.64%	2903.2	7.83%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	5228.0	42.63%	17606.7	47.50%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	6491.0	52.92%	24309.9	65.59%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	0.000e+00	1.0000	2716.0	22.14%	11277.8	30.43%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	0.000e+00	1.0000	2058.0	16.78%	9055.8	24.43%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	0.000e+00	1.0000	4285.0	34.94%	14359.0	38.74%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	0.000e+00	1.0000	3465.0	28.25%	12100.1	32.64%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	0.000e+00	1.0000	3699.0	30.16%	12995.1	35.06%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	0.000e+00	1.0000	1253.0	10.22%	5187.4	13.99%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	328.0	2.67%	1516.9	4.09%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	144.0	1.17%	1150.9	3.10%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	0.000e+00	1.0000	1593.0	12.99%	7061.7	19.05%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	0.000e+00	1.0000	2520.0	20.55%	8891.9	23.99%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	0.000e+00	1.0000	8027.0	65.45%	25632.9	69.15%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	0.000e+00	1.0000	2946.0	24.02%	10406.9	28.08%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	4251.0	34.66%	16518.2	44.56%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	2561.0	20.88%	10473.1	28.26%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	9190.0	74.93%	29072.0	78.43%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	3604.0	29.38%	16894.9	45.58%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	1969.0	16.05%	8157.9	22.01%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	10529.0	85.85%	32831.4	88.58%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	0.000e+00	1.0000	3556.0	28.99%	14408.2	38.87%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	0.000e+00	1.0000	3372.0	27.49%	12895.2	34.79%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	7597.0	61.94%	29050.5	78.38%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	157.0	1.28%	1462.2	3.94%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	0.000e+00	1.0000	2958.0	24.12%	10357.2	27.94%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	0.000e+00	1.0000	4229.0	34.48%	14127.6	38.11%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	0.000e+00	1.0000	3563.0	29.05%	12233.1	33.00%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	0.000e+00	1.0000	3935.0	32.08%	14765.1	39.83%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	0.000e+00	1.0000	1772.0	14.45%	7472.3	20.16%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	0.000e+00	1.0000	2003.0	16.33%	8011.8	21.61%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	297.0	2.42%	1938.4	5.23%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	1473.0	12.01%	5806.6	15.67%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	0.000e+00	1.0000	9694.0	79.04%	33302.8	89.85%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	0.000e+00	1.0000	622.0	5.07%	2978.4	8.04%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	0.000e+00	1.0000	8196.0	66.82%	26652.9	71.91%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	5926.0	48.32%	20974.9	56.59%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	3639.0	29.67%	13318.9	35.93%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	0.000e+00	1.0000	4744.0	38.68%	16992.0	45.84%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	0.000e+00	1.0000	5723.0	46.66%	19538.9	52.71%