Information for 16-AGCAGGTT (Motif 11)

C G T A C T A G A T G C T C G A A T C G A T C G C A G T A C G T
Reverse Opposite:
G T C A G T C A T A G C A T G C A G C T T A C G A G T C A C G T
p-value:1e-18
log p-value:-4.195e+01
Information Content per bp:1.737
Number of Target Sequences with motif988.0
Percentage of Target Sequences with motif60.21%
Number of Background Sequences with motif23481.9
Percentage of Background Sequences with motif49.33%
Average Position of motif in Targets404.4 +/- 267.6bp
Average Position of motif in Background371.7 +/- 229.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.52
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---AGCAGGTT
CACAGCAGGGG
 A C G T A C G T A C G T C G T A C T A G A T G C T C G A A T C G A T C G C A G T A C G T
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G

Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:AGCAGGTT--
RGCAGGTGYA
 C G T A C T A G A T G C T C G A A T C G A T C G C A G T A C G T A C G T A C G T
T C G A T C A G T A G C C G T A T A C G T A C G A G C T C A T G A G C T T C G A

GRHL2/MA1105.2/Jaspar

Match Rank:3
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--AGCAGGTT--
AAAACAGGTTTT
 A C G T A C G T C G T A C T A G A T G C T C G A A T C G A T C G C A G T A C G T A C G T A C G T
T G C A T C G A C T G A C T G A T A G C G C T A C T A G T A C G G A C T G A C T A G C T C A G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGGTT---
SDGCAGGTGCNS
 A C G T C G T A C T A G A T G C T C G A A T C G A T C G C A G T A C G T A C G T A C G T A C G T
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:5
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGGTT--
NNGCAGGTGNN
 A C G T C G T A C T A G A T G C T C G A A T C G A T C G C A G T A C G T A C G T A C G T
T A G C T C A G T C A G A G T C T C G A A T C G T A C G A G C T T C A G A T G C A T C G

TCF3/MA0522.3/Jaspar

Match Rank:6
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGGTT--
NNGCAGGTGNN
 A C G T C G T A C T A G A T G C T C G A A T C G A T C G C A G T A C G T A C G T A C G T
T A C G A T C G T C A G A G T C T C G A A T C G T A C G A G C T T A C G A T G C A T C G

ASCL1(var.2)/MA1631.1/Jaspar

Match Rank:7
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--AGCAGGTT---
NNGGCAGGTGCNN
 A C G T A C G T C G T A C T A G A T G C T C G A A T C G A T C G C A G T A C G T A C G T A C G T A C G T
T A C G T A C G C T A G T A C G A T G C T C G A A T C G T A C G G A C T T A C G A T G C G C A T T A C G

Zic2/MA1629.1/Jaspar

Match Rank:8
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----AGCAGGTT-
CTCACAGCAGGGGG
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G A T G C T C G A A T C G A T C G C A G T A C G T A C G T
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G

SNAI1/MA1558.1/Jaspar

Match Rank:9
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AGCAGGTT--
GGCAGGTGCA
 C G T A C T A G A T G C T C G A A T C G A T C G C A G T A C G T A C G T A C G T
C T A G C T A G G T A C G C T A T C A G C T A G C A G T C T A G A G T C C T G A

SNAI3/MA1559.1/Jaspar

Match Rank:10
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AGCAGGTT--
AACAGGTGCA
 C G T A C T A G A T G C T C G A A T C G A T C G C A G T A C G T A C G T A C G T
C T G A C T G A G A T C C T G A C T A G A T C G A C G T C T A G A G T C T C G A