Information for 20-TGCCTGGCAC (Motif 16)

A G C T A C T G G A T C G A T C C G A T C T A G A T C G A G T C C G T A T G A C
Reverse Opposite:
A C T G G C A T T C A G T A G C A G T C C G T A C T A G C T A G T G A C C T G A
p-value:1e-12
log p-value:-2.766e+01
Information Content per bp:1.821
Number of Target Sequences with motif156.0
Percentage of Target Sequences with motif9.51%
Number of Background Sequences with motif2479.0
Percentage of Background Sequences with motif5.21%
Average Position of motif in Targets379.3 +/- 252.7bp
Average Position of motif in Background364.6 +/- 227.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TGCCTGGCAC--
CTGTCTGTCACCT
 A C G T A G C T A C T G G A T C G A T C C G A T C T A G A T C G A G T C C G T A T G A C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TGCCTGGCAC--
TGTCTGDCACCT
 A G C T A C T G G A T C G A T C C G A T C T A G A T C G A G T C C G T A T G A C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TGCCTGGCAC
--CTTGGCAA
 A G C T A C T G G A T C G A T C C G A T C T A G A T C G A G T C C G T A T G A C
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGCCTGGCAC-
TACTTGGCAGA
 A G C T A C T G G A T C G A T C C G A T C T A G A T C G A G T C C G T A T G A C A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGCCTGGCAC
-VGCTGGCA-
 A G C T A C T G G A T C G A T C C G A T C T A G A T C G A G T C C G T A T G A C
A C G T T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGCCTGGCAC-
--NTTGGCANN
 A G C T A C T G G A T C G A T C C G A T C T A G A T C G A G T C C G T A T G A C A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGCCTGGCAC
TTGCGTGCVA-
 A C G T A G C T A C T G G A T C G A T C C G A T C T A G A T C G A G T C C G T A T G A C
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TGCCTGGCAC-
-VGCTGWCAVB
 A G C T A C T G G A T C G A T C C G A T C T A G A T C G A G T C C G T A T G A C A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGCCTGGCAC-
BTGABTGACAGS
 A C G T A G C T A C T G G A T C G A T C C G A T C T A G A T C G A G T C C G T A T G A C A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGCCTGGCAC
-GGTTGGCAT
 A G C T A C T G G A T C G A T C C G A T C T A G A T C G A G T C C G T A T G A C
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T