Information for 4-TGCCATGGYAAC (Motif 4)

G A C T C A T G A G T C A G T C C G T A C G A T A C T G T C A G G A T C T C G A C T G A T A G C
Reverse Opposite:
A T C G G A C T A G C T C T A G A G T C T A G C G C T A G C A T C T A G T C A G G T A C C T G A
p-value:1e-39
log p-value:-9.097e+01
Information Content per bp:1.675
Number of Target Sequences with motif175.0
Percentage of Target Sequences with motif10.66%
Number of Background Sequences with motif1587.4
Percentage of Background Sequences with motif3.33%
Average Position of motif in Targets418.2 +/- 247.7bp
Average Position of motif in Background375.4 +/- 225.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TGCCATGGYAAC-
TTGCCATGGCAACN
 A C G T G A C T C A T G A G T C A G T C C G T A C G A T A C T G T C A G G A T C T C G A C T G A T A G C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TGCCATGGYAAC-
TTGCCATGGCAACC
 A C G T G A C T C A T G A G T C A G T C C G T A C G A T A C T G T C A G G A T C T C G A C T G A T A G C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX3/MA0798.2/Jaspar

Match Rank:3
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TGCCATGGYAAC--
TNCCATAGCAACNN
 G A C T C A T G A G T C A G T C C G T A C G A T A C T G T C A G G A T C T C G A C T G A T A G C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---TGCCATGGYAAC
KGTTGCCATGGCAAC
 A C G T A C G T A C G T G A C T C A T G A G T C A G T C C G T A C G A T A C T G T C A G G A T C T C G A C T G A T A G C
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX1/MA0509.2/Jaspar

Match Rank:5
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TGCCATGGYAAC--
TNCCATAGCAACNN
 G A C T C A T G A G T C A G T C C G T A C G A T A C T G T C A G G A T C T C G A C T G A T A G C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--TGCCATGGYAAC--
GTTGCCATGGCAACCG
 A C G T A C G T G A C T C A T G A G T C A G T C C G T A C G A T A C T G T C A G G A T C T C G A C T G A T A G C A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX5/MA0510.2/Jaspar

Match Rank:7
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---TGCCATGGYAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T G A C T C A T G A G T C A G T C C G T A C G A T A C T G T C A G G A T C T C G A C T G A T A G C A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---TGCCATGGYAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T G A C T C A T G A G T C A G T C C G T A C G A T A C T G T C A G G A T C T C G A C T G A T A G C A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---TGCCATGGYAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T G A C T C A T G A G T C A G T C C G T A C G A T A C T G T C A G G A T C T C G A C T G A T A G C A C G T
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.77
Offset:2
Orientation:forward strand
Alignment:TGCCATGGYAAC--
--SCCTAGCAACAG
 G A C T C A T G A G T C A G T C C G T A C G A T A C T G T C A G G A T C T C G A C T G A T A G C A C G T A C G T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G