Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1641)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47602)	% of Background Sequences with Motif
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-225	-5.182e+02	0.0000	775.0	47.23%	6716.6	14.11%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-224	-5.161e+02	0.0000	861.0	52.47%	8365.4	17.57%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-221	-5.102e+02	0.0000	845.0	51.49%	8120.1	17.06%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-208	-4.811e+02	0.0000	903.0	55.03%	9673.2	20.32%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-201	-4.647e+02	0.0000	815.0	49.66%	8087.1	16.99%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-200	-4.623e+02	0.0000	623.0	37.96%	4702.1	9.88%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-198	-4.565e+02	0.0000	892.0	54.36%	9777.5	20.54%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-187	-4.316e+02	0.0000	520.0	31.69%	3422.0	7.19%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-182	-4.203e+02	0.0000	917.0	55.88%	10857.1	22.81%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-96	-2.232e+02	0.0000	879.0	53.56%	13709.4	28.80%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-90	-2.094e+02	0.0000	985.0	60.02%	16831.4	35.36%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-86	-1.987e+02	0.0000	1207.0	73.55%	23620.4	49.62%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-74	-1.706e+02	0.0000	324.0	19.74%	2985.2	6.27%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-70	-1.618e+02	0.0000	1309.0	79.77%	28142.1	59.12%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-61	-1.406e+02	0.0000	1095.0	66.73%	22093.1	46.41%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-57	-1.327e+02	0.0000	1156.0	70.44%	24229.3	50.90%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-55	-1.285e+02	0.0000	1061.0	64.66%	21524.2	45.22%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-54	-1.266e+02	0.0000	1220.0	74.34%	26473.2	55.62%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-47	-1.095e+02	0.0000	171.0	10.42%	1316.6	2.77%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-44	-1.017e+02	0.0000	154.0	9.38%	1152.5	2.42%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-39	-9.108e+01	0.0000	234.0	14.26%	2586.3	5.43%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-37	-8.567e+01	0.0000	177.0	10.79%	1689.5	3.55%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-35	-8.086e+01	0.0000	410.0	24.98%	6407.0	13.46%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-32	-7.589e+01	0.0000	619.0	37.72%	11567.1	24.30%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-29	-6.698e+01	0.0000	368.0	22.43%	5884.0	12.36%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-27	-6.404e+01	0.0000	235.0	14.32%	3135.7	6.59%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-26	-6.166e+01	0.0000	1022.0	62.28%	23310.9	48.97%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-22	-5.165e+01	0.0000	1327.0	80.87%	33404.5	70.18%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-20	-4.628e+01	0.0000	1067.0	65.02%	25548.0	53.67%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-19	-4.556e+01	0.0000	1580.0	96.28%	42974.1	90.28%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-19	-4.498e+01	0.0000	95.0	5.79%	920.5	1.93%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-17	-4.131e+01	0.0000	86.0	5.24%	826.3	1.74%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-17	-4.030e+01	0.0000	425.0	25.90%	8262.0	17.36%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-17	-3.920e+01	0.0000	1077.0	65.63%	26314.5	55.28%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-15	-3.664e+01	0.0000	454.0	27.67%	9176.0	19.28%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-15	-3.655e+01	0.0000	651.0	39.67%	14344.9	30.14%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-15	-3.537e+01	0.0000	75.0	4.57%	732.8	1.54%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-13	-3.043e+01	0.0000	231.0	14.08%	4053.0	8.51%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-12	-2.779e+01	0.0000	128.0	7.80%	1882.1	3.95%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-11	-2.620e+01	0.0000	332.0	20.23%	6679.4	14.03%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-10	-2.304e+01	0.0000	389.0	23.71%	8314.1	17.47%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-9	-2.302e+01	0.0000	557.0	33.94%	12751.2	26.79%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-9	-2.204e+01	0.0000	491.0	29.92%	11057.6	23.23%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-9	-2.173e+01	0.0000	264.0	16.09%	5246.9	11.02%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-9	-2.106e+01	0.0000	589.0	35.89%	13779.1	28.95%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-9	-2.103e+01	0.0000	803.0	48.93%	19753.9	41.50%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-8	-1.920e+01	0.0000	97.0	5.91%	1489.7	3.13%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-8	-1.884e+01	0.0000	387.0	23.58%	8555.7	17.97%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-7	-1.788e+01	0.0000	75.0	4.57%	1073.5	2.26%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-7	-1.768e+01	0.0000	1014.0	61.79%	26213.0	55.07%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-7	-1.702e+01	0.0000	801.0	48.81%	20090.2	42.21%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-6	-1.513e+01	0.0000	216.0	13.16%	4447.1	9.34%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-6	-1.510e+01	0.0000	153.0	9.32%	2916.8	6.13%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-6	-1.509e+01	0.0000	625.0	38.09%	15329.0	32.20%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-6	-1.496e+01	0.0000	388.0	23.64%	8891.5	18.68%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-6	-1.495e+01	0.0000	177.0	10.79%	3500.3	7.35%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-6	-1.474e+01	0.0000	279.0	17.00%	6064.9	12.74%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-6	-1.433e+01	0.0000	197.0	12.00%	4026.7	8.46%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-6	-1.422e+01	0.0000	1057.0	64.41%	27868.1	58.55%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-5	-1.363e+01	0.0000	477.0	29.07%	11406.2	23.96%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-5	-1.331e+01	0.0000	441.0	26.87%	10462.0	21.98%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-5	-1.311e+01	0.0000	396.0	24.13%	9271.4	19.48%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-5	-1.281e+01	0.0000	23.0	1.40%	213.5	0.45%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-5	-1.257e+01	0.0000	127.0	7.74%	2428.2	5.10%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-5	-1.250e+01	0.0000	199.0	12.13%	4193.6	8.81%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-5	-1.244e+01	0.0000	300.0	18.28%	6789.9	14.26%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-5	-1.238e+01	0.0000	455.0	27.73%	10935.9	22.97%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-5	-1.213e+01	0.0000	440.0	26.81%	10553.1	22.17%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e-5	-1.206e+01	0.0000	437.0	26.63%	10479.4	22.02%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-5	-1.188e+01	0.0000	342.0	20.84%	7946.4	16.69%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-5	-1.170e+01	0.0001	244.0	14.87%	5396.1	11.34%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-5	-1.151e+01	0.0001	276.0	16.82%	6241.1	13.11%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-4	-1.137e+01	0.0001	140.0	8.53%	2806.5	5.90%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-4	-1.136e+01	0.0001	534.0	32.54%	13215.1	27.76%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-4	-1.086e+01	0.0001	289.0	17.61%	6639.4	13.95%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-4	-1.062e+01	0.0001	613.0	37.36%	15506.6	32.58%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-4	-1.059e+01	0.0001	686.0	41.80%	17567.4	36.91%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-4	-1.051e+01	0.0002	614.0	37.42%	15548.9	32.67%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e-4	-1.006e+01	0.0002	515.0	31.38%	12844.2	26.98%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-4	-9.940e+00	0.0003	602.0	36.68%	15285.2	32.11%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-4	-9.747e+00	0.0003	513.0	31.26%	12828.8	26.95%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-4	-9.546e+00	0.0004	630.0	38.39%	16125.4	33.88%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-4	-9.269e+00	0.0005	788.0	48.02%	20661.6	43.41%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-3	-9.181e+00	0.0005	653.0	39.79%	16825.5	35.35%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-3	-9.057e+00	0.0006	904.0	55.09%	24047.7	50.52%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-3	-8.531e+00	0.0010	750.0	45.70%	19681.1	41.35%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-3	-8.460e+00	0.0011	119.0	7.25%	2471.3	5.19%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-3	-8.087e+00	0.0015	831.0	50.64%	22080.9	46.39%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-3	-7.966e+00	0.0017	606.0	36.93%	15674.7	32.93%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-3	-7.874e+00	0.0019	399.0	24.31%	9924.2	20.85%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-3	-7.461e+00	0.0028	341.0	20.78%	8392.4	17.63%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-3	-7.332e+00	0.0031	551.0	33.58%	14222.5	29.88%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-3	-7.158e+00	0.0037	406.0	24.74%	10212.4	21.45%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-3	-7.100e+00	0.0039	209.0	12.74%	4892.6	10.28%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-3	-7.078e+00	0.0039	72.0	4.39%	1410.1	2.96%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-6.949e+00	0.0044	535.0	32.60%	13832.0	29.06%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-6.878e+00	0.0047	483.0	29.43%	12388.9	26.03%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-2	-6.862e+00	0.0047	1463.0	89.15%	41221.7	86.60%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-6.799e+00	0.0050	1328.0	80.93%	37037.0	77.81%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-2	-6.796e+00	0.0050	764.0	46.56%	20364.1	42.78%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-2	-6.744e+00	0.0051	826.0	50.34%	22160.6	46.56%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-2	-6.548e+00	0.0062	348.0	21.21%	8702.4	18.28%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-2	-6.471e+00	0.0066	560.0	34.13%	14612.7	30.70%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-2	-6.352e+00	0.0074	699.0	42.60%	18579.9	39.03%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-6.315e+00	0.0076	201.0	12.25%	4762.1	10.00%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2	-5.849e+00	0.0120	446.0	27.18%	11517.2	24.20%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-5.581e+00	0.0155	278.0	16.94%	6922.4	14.54%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-5.556e+00	0.0157	260.0	15.84%	6436.7	13.52%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-2	-5.368e+00	0.0188	86.0	5.24%	1864.0	3.92%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-5.252e+00	0.0210	1301.0	79.28%	36464.3	76.61%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-5.194e+00	0.0220	538.0	32.78%	14215.6	29.86%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-2	-4.986e+00	0.0268	202.0	12.31%	4942.5	10.38%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-4.977e+00	0.0268	333.0	20.29%	8520.0	17.90%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-2	-4.973e+00	0.0268	684.0	41.68%	18412.3	38.68%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-2	-4.942e+00	0.0273	198.0	12.07%	4840.8	10.17%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-2	-4.632e+00	0.0369	179.0	10.91%	4368.1	9.18%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-1	-4.437e+00	0.0445	679.0	41.38%	18382.8	38.62%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-4.373e+00	0.0470	642.0	39.12%	17337.3	36.42%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-4.337e+00	0.0483	745.0	45.40%	20300.5	42.65%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-4.169e+00	0.0567	419.0	25.53%	11059.9	23.24%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-4.117e+00	0.0592	149.0	9.08%	3627.5	7.62%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-4.110e+00	0.0592	534.0	32.54%	14318.6	30.08%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.985e+00	0.0665	788.0	48.02%	21622.2	45.42%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-3.915e+00	0.0708	105.0	6.40%	2481.0	5.21%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-3.899e+00	0.0713	371.0	22.61%	9766.8	20.52%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.867e+00	0.0731	143.0	8.71%	3497.2	7.35%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-3.852e+00	0.0736	229.0	13.95%	5835.1	12.26%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-3.831e+00	0.0745	108.0	6.58%	2569.5	5.40%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-3.827e+00	0.0745	814.0	49.60%	22412.1	47.08%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-3.817e+00	0.0745	155.0	9.45%	3826.0	8.04%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.764e+00	0.0779	638.0	38.88%	17361.8	36.47%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.752e+00	0.0782	68.0	4.14%	1533.0	3.22%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-1	-3.666e+00	0.0846	221.0	13.47%	5645.8	11.86%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-3.554e+00	0.0939	504.0	30.71%	13590.7	28.55%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-3.504e+00	0.0980	368.0	22.43%	9761.7	20.51%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-3.379e+00	0.1103	590.0	35.95%	16082.9	33.79%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-1	-3.223e+00	0.1279	131.0	7.98%	3257.4	6.84%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.121e+00	0.1407	328.0	19.99%	8719.7	18.32%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.086e+00	0.1447	848.0	51.68%	23591.8	49.56%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.983e+00	0.1592	117.0	7.13%	2911.9	6.12%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-2.888e+00	0.1737	421.0	25.66%	11396.0	23.94%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.853e+00	0.1786	87.0	5.30%	2121.8	4.46%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e-1	-2.842e+00	0.1794	27.0	1.65%	563.4	1.18%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.738e+00	0.1976	346.0	21.08%	9311.8	19.56%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-2.616e+00	0.2217	5.0	0.30%	64.1	0.13%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-1	-2.581e+00	0.2281	165.0	10.05%	4285.4	9.00%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-2.524e+00	0.2398	291.0	17.73%	7812.0	16.41%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.512e+00	0.2411	311.0	18.95%	8378.8	17.60%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.408e+00	0.2657	59.0	3.60%	1425.8	3.00%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-2.257e+00	0.3070	445.0	27.12%	12247.8	25.73%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.232e+00	0.3128	167.0	10.18%	4405.6	9.26%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-2.145e+00	0.3389	288.0	17.55%	7820.7	16.43%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.128e+00	0.3425	106.0	6.46%	2736.5	5.75%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.119e+00	0.3432	213.0	12.98%	5714.1	12.00%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.113e+00	0.3433	199.0	12.13%	5323.6	11.18%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.065e+00	0.3576	93.0	5.67%	2389.5	5.02%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.063e+00	0.3576	201.0	12.25%	5390.3	11.32%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.045e+00	0.3602	1087.0	66.24%	30882.3	64.88%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.043e+00	0.3602	311.0	18.95%	8498.5	17.85%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.043e+00	0.3602	583.0	35.53%	16267.4	34.18%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.033e+00	0.3602	297.0	18.10%	8104.8	17.03%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.030e+00	0.3602	331.0	20.17%	9069.2	19.05%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.980e+00	0.3728	50.0	3.05%	1232.9	2.59%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.965e+00	0.3760	74.0	4.51%	1884.7	3.96%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.959e+00	0.3760	253.0	15.42%	6880.0	14.45%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.924e+00	0.3869	494.0	30.10%	13753.1	28.89%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-1.835e+00	0.4207	516.0	31.44%	14415.7	30.29%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.833e+00	0.4207	314.0	19.13%	8643.2	18.16%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.828e+00	0.4207	194.0	11.82%	5248.4	11.03%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.808e+00	0.4245	35.0	2.13%	850.0	1.79%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.805e+00	0.4245	174.0	10.60%	4691.9	9.86%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.792e+00	0.4263	45.0	2.74%	1119.3	2.35%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.783e+00	0.4274	44.0	2.68%	1093.7	2.30%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.782e+00	0.4274	349.0	21.27%	9655.0	20.28%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.763e+00	0.4312	274.0	16.70%	7527.1	15.81%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.723e+00	0.4463	112.0	6.83%	2973.3	6.25%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.694e+00	0.4569	877.0	53.44%	24895.3	52.30%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.686e+00	0.4581	52.0	3.17%	1322.4	2.78%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.681e+00	0.4581	114.0	6.95%	3037.4	6.38%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.675e+00	0.4581	461.0	28.09%	12894.0	27.09%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.633e+00	0.4749	3.0	0.18%	44.6	0.09%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.563e+00	0.5065	30.0	1.83%	740.1	1.55%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.553e+00	0.5089	449.0	27.36%	12595.0	26.46%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.546e+00	0.5093	127.0	7.74%	3429.8	7.21%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.538e+00	0.5110	128.0	7.80%	3459.5	7.27%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.537e+00	0.5110	363.0	22.12%	10136.9	21.30%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.537e+00	0.5110	225.0	13.71%	6201.5	13.03%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.500e+00	0.5220	55.0	3.35%	1430.7	3.01%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.492e+00	0.5238	10.0	0.61%	218.2	0.46%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.443e+00	0.5470	349.0	21.27%	9769.3	20.52%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.440e+00	0.5470	102.0	6.22%	2750.3	5.78%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.424e+00	0.5515	31.0	1.89%	782.4	1.64%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.409e+00	0.5573	68.0	4.14%	1805.0	3.79%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.396e+00	0.5617	155.0	9.45%	4255.6	8.94%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.388e+00	0.5634	861.0	52.47%	24563.2	51.60%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.368e+00	0.5718	974.0	59.35%	27855.5	58.52%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.360e+00	0.5733	901.0	54.91%	25737.8	54.07%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.350e+00	0.5763	192.0	11.70%	5318.6	11.17%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.329e+00	0.5851	515.0	31.38%	14584.8	30.64%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.324e+00	0.5856	1442.0	87.87%	41566.9	87.33%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.287e+00	0.6045	270.0	16.45%	7564.9	15.89%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.276e+00	0.6081	32.0	1.95%	827.0	1.74%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.259e+00	0.6153	115.0	7.01%	3157.6	6.63%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.257e+00	0.6153	1102.0	67.15%	31633.7	66.46%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.194e+00	0.6504	97.0	5.91%	2663.9	5.60%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.172e+00	0.6617	30.0	1.83%	785.2	1.65%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.170e+00	0.6617	345.0	21.02%	9760.3	20.50%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.151e+00	0.6690	700.0	42.66%	20013.5	42.05%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.141e+00	0.6729	141.0	8.59%	3927.8	8.25%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.118e+00	0.6847	1256.0	76.54%	36190.0	76.03%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.107e+00	0.6896	303.0	18.46%	8579.0	18.02%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.072e+00	0.7103	300.0	18.28%	8507.0	17.87%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.058e+00	0.7174	467.0	28.46%	13326.6	28.00%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.043e+00	0.7246	111.0	6.76%	3099.1	6.51%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.043e+00	0.7246	52.0	3.17%	1422.3	2.99%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.038e+00	0.7246	9.0	0.55%	221.6	0.47%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.026e+00	0.7268	175.0	10.66%	4935.0	10.37%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.018e+00	0.7291	465.0	28.34%	13288.2	27.92%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-9.281e-01	0.7942	158.0	9.63%	4481.4	9.41%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-9.269e-01	0.7942	124.0	7.56%	3505.6	7.36%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-8.985e-01	0.8107	267.0	16.27%	7632.8	16.04%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-8.935e-01	0.8110	214.0	13.04%	6107.0	12.83%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-8.812e-01	0.8174	452.0	27.54%	12986.0	27.28%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-8.773e-01	0.8174	41.0	2.50%	1141.6	2.40%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-8.659e-01	0.8227	794.0	48.39%	22899.4	48.11%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-8.556e-01	0.8275	566.0	34.49%	16299.6	34.24%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.969e-01	0.8736	891.0	54.30%	25757.1	54.11%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.808e-01	0.8840	224.0	13.65%	6444.4	13.54%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-7.805e-01	0.8840	169.0	10.30%	4854.6	10.20%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.772e-01	0.8840	25.0	1.52%	701.2	1.47%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-7.591e-01	0.8916	6.0	0.37%	159.0	0.33%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-7.553e-01	0.8916	12.0	0.73%	331.8	0.70%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-7.504e-01	0.8917	69.0	4.20%	1975.8	4.15%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-7.488e-01	0.8917	116.0	7.07%	3334.4	7.01%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.385e-01	0.8947	201.0	12.25%	5798.0	12.18%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.380e-01	0.8947	12.0	0.73%	333.4	0.70%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-7.242e-01	0.8998	763.0	46.50%	22095.4	46.42%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-7.097e-01	0.9092	86.0	5.24%	2479.2	5.21%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.004e-01	0.9139	28.0	1.71%	801.2	1.68%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-7.003e-01	0.9139	4.0	0.24%	106.1	0.22%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-6.876e-01	0.9180	190.0	11.58%	5503.6	11.56%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-6.812e-01	0.9200	400.0	24.38%	11598.6	24.37%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.810e-01	0.9200	181.0	11.03%	5245.2	11.02%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-6.522e-01	0.9394	61.0	3.72%	1771.9	3.72%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.309e-01	0.9556	154.0	9.38%	4484.1	9.42%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.223e-01	0.9600	245.0	14.93%	7134.2	14.99%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-6.183e-01	0.9600	73.0	4.45%	2131.1	4.48%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.169e-01	0.9600	64.0	3.90%	1869.7	3.93%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.169e-01	0.9600	64.0	3.90%	1869.7	3.93%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-5.896e-01	0.9760	853.0	51.98%	24808.7	52.12%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-5.812e-01	0.9803	850.0	51.80%	24729.0	51.95%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.727e-01	0.9847	75.0	4.57%	2205.0	4.63%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-5.691e-01	0.9847	157.0	9.57%	4601.8	9.67%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-5.405e-01	1.0000	724.0	44.12%	21108.5	44.35%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-5.356e-01	1.0000	192.0	11.70%	5640.9	11.85%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-5.356e-01	1.0000	246.0	14.99%	7215.6	15.16%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.305e-01	1.0000	158.0	9.63%	4650.3	9.77%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-5.302e-01	1.0000	523.0	31.87%	15280.9	32.10%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-5.214e-01	1.0000	361.0	22.00%	10575.1	22.22%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-5.067e-01	1.0000	845.0	51.49%	24648.8	51.78%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-4.890e-01	1.0000	17.0	1.04%	518.4	1.09%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-4.841e-01	1.0000	277.0	16.88%	8154.6	17.13%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.772e-01	1.0000	57.0	3.47%	1710.5	3.59%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.632e-01	1.0000	62.0	3.78%	1863.5	3.92%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.632e-01	1.0000	52.0	3.17%	1567.6	3.29%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.581e-01	1.0000	134.0	8.17%	3986.8	8.38%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.269e-01	1.0000	63.0	3.84%	1907.3	4.01%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-4.141e-01	1.0000	35.0	2.13%	1077.8	2.26%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.988e-01	1.0000	659.0	40.16%	19357.8	40.67%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-3.956e-01	1.0000	95.0	5.79%	2870.3	6.03%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-3.831e-01	1.0000	532.0	32.42%	15679.9	32.94%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.745e-01	1.0000	48.0	2.93%	1481.3	3.11%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.704e-01	1.0000	275.0	16.76%	8185.7	17.20%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-3.672e-01	1.0000	412.0	25.11%	12196.2	25.62%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.672e-01	1.0000	113.0	6.89%	3419.3	7.18%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-3.587e-01	1.0000	365.0	22.24%	10831.8	22.76%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.546e-01	1.0000	46.0	2.80%	1429.1	3.00%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.539e-01	1.0000	1244.0	75.81%	36332.3	76.33%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-3.514e-01	1.0000	566.0	34.49%	16704.4	35.09%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.405e-01	1.0000	500.0	30.47%	14793.9	31.08%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-3.165e-01	1.0000	529.0	32.24%	15667.7	32.92%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-3.116e-01	1.0000	700.0	42.66%	20651.4	43.39%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-3.028e-01	1.0000	7.0	0.43%	245.5	0.52%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.015e-01	1.0000	83.0	5.06%	2566.2	5.39%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.982e-01	1.0000	70.0	4.27%	2178.8	4.58%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-2.917e-01	1.0000	832.0	50.70%	24509.9	51.49%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-2.902e-01	1.0000	156.0	9.51%	4748.6	9.98%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.870e-01	1.0000	416.0	25.35%	12402.9	26.06%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.641e-01	1.0000	38.0	2.32%	1226.5	2.58%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-2.586e-01	1.0000	40.0	2.44%	1290.6	2.71%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.432e-01	1.0000	543.0	33.09%	16174.7	33.98%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-2.410e-01	1.0000	464.0	28.28%	13868.6	29.14%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-2.347e-01	1.0000	644.0	39.24%	19132.8	40.20%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.343e-01	1.0000	64.0	3.90%	2036.4	4.28%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.343e-01	1.0000	64.0	3.90%	2036.4	4.28%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.316e-01	1.0000	95.0	5.79%	2975.6	6.25%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-2.260e-01	1.0000	1070.0	65.20%	31485.1	66.15%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-2.132e-01	1.0000	43.0	2.62%	1407.2	2.96%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.126e-01	1.0000	10.0	0.61%	366.5	0.77%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.005e-01	1.0000	1034.0	63.01%	30490.8	64.06%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.003e-01	1.0000	39.0	2.38%	1291.5	2.71%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-1.957e-01	1.0000	1014.0	61.79%	29922.0	62.86%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.921e-01	1.0000	117.0	7.13%	3673.2	7.72%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.894e-01	1.0000	5.0	0.30%	203.9	0.43%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.881e-01	1.0000	429.0	26.14%	12925.4	27.15%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.823e-01	1.0000	398.0	24.25%	12024.2	25.26%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-1.813e-01	1.0000	849.0	51.74%	25181.7	52.90%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.805e-01	1.0000	168.0	10.24%	5216.9	10.96%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.795e-01	1.0000	308.0	18.77%	9376.3	19.70%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.777e-01	1.0000	536.0	32.66%	16079.0	33.78%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.725e-01	1.0000	532.0	32.42%	15972.6	33.56%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.639e-01	1.0000	63.0	3.84%	2059.4	4.33%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.571e-01	1.0000	9.0	0.55%	352.4	0.74%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.568e-01	1.0000	2.0	0.12%	99.8	0.21%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.500e-01	1.0000	41.0	2.50%	1389.0	2.92%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.456e-01	1.0000	677.0	41.26%	20262.8	42.57%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.430e-01	1.0000	49.0	2.99%	1644.9	3.46%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.401e-01	1.0000	452.0	27.54%	13693.3	28.77%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-1.363e-01	1.0000	152.0	9.26%	4796.9	10.08%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.348e-01	1.0000	404.0	24.62%	12292.2	25.82%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.345e-01	1.0000	10.0	0.61%	396.3	0.83%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-1.282e-01	1.0000	1028.0	62.64%	30466.3	64.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.280e-01	1.0000	2.0	0.12%	106.0	0.22%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.006e-01	1.0000	531.0	32.36%	16113.7	33.85%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-9.921e-02	1.0000	368.0	22.43%	11316.0	23.77%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-9.262e-02	1.0000	14.0	0.85%	558.1	1.17%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-9.256e-02	1.0000	161.0	9.81%	5145.8	10.81%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-8.957e-02	1.0000	745.0	45.40%	22397.1	47.05%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-8.587e-02	1.0000	242.0	14.75%	7600.9	15.97%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-8.546e-02	1.0000	110.0	6.70%	3605.0	7.57%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-8.217e-02	1.0000	432.0	26.33%	13258.8	27.85%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-8.085e-02	1.0000	455.0	27.73%	13941.0	29.29%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-8.077e-02	1.0000	94.0	5.73%	3121.2	6.56%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-7.891e-02	1.0000	123.0	7.50%	4017.5	8.44%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-7.704e-02	1.0000	256.0	15.60%	8044.7	16.90%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-7.467e-02	1.0000	504.0	30.71%	15406.6	32.37%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-7.296e-02	1.0000	132.0	8.04%	4306.1	9.05%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-7.107e-02	1.0000	493.0	30.04%	15096.8	31.72%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-7.096e-02	1.0000	627.0	38.21%	19027.4	39.97%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-6.832e-02	1.0000	374.0	22.79%	11590.3	24.35%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-6.775e-02	1.0000	148.0	9.02%	4808.6	10.10%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.546e-02	1.0000	492.0	29.98%	15089.8	31.70%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.225e-02	1.0000	803.0	48.93%	24189.5	50.82%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-6.115e-02	1.0000	24.0	1.46%	928.8	1.95%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-5.632e-02	1.0000	772.0	47.04%	23318.4	48.99%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.100e-02	1.0000	35.0	2.13%	1309.4	2.75%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.015e-02	1.0000	324.0	19.74%	10176.4	21.38%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-4.625e-02	1.0000	452.0	27.54%	13999.0	29.41%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-4.624e-02	1.0000	65.0	3.96%	2288.7	4.81%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-4.585e-02	1.0000	17.0	1.04%	711.3	1.49%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.525e-02	1.0000	61.0	3.72%	2163.8	4.55%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-4.475e-02	1.0000	881.0	53.69%	26538.9	55.75%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-4.215e-02	1.0000	671.0	40.89%	20457.6	42.98%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-4.096e-02	1.0000	546.0	33.27%	16802.2	35.30%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-4.051e-02	1.0000	496.0	30.23%	15332.4	32.21%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.968e-02	1.0000	112.0	6.83%	3786.5	7.95%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-3.880e-02	1.0000	537.0	32.72%	16551.7	34.77%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-3.653e-02	1.0000	2.0	0.12%	149.1	0.31%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.533e-02	1.0000	417.0	25.41%	13027.4	27.37%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.916e-02	1.0000	415.0	25.29%	13012.2	27.34%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.380e-02	1.0000	150.0	9.14%	5043.9	10.60%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.218e-02	1.0000	554.0	33.76%	17188.4	36.11%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-2.109e-02	1.0000	629.0	38.33%	19403.5	40.76%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-2.037e-02	1.0000	375.0	22.85%	11898.9	25.00%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.513e-02	1.0000	18.0	1.10%	821.1	1.73%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.344e-02	1.0000	223.0	13.59%	7383.4	15.51%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-9.569e-03	1.0000	1092.0	66.54%	32940.3	69.20%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-8.129e-03	1.0000	270.0	16.45%	8904.4	18.71%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-7.835e-03	1.0000	49.0	2.99%	1947.5	4.09%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.723e-03	1.0000	307.0	18.71%	10062.9	21.14%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-5.960e-03	1.0000	18.0	1.10%	879.2	1.85%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-5.205e-03	1.0000	543.0	33.09%	17174.3	36.08%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-4.964e-03	1.0000	28.0	1.71%	1256.3	2.64%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-3.111e-03	1.0000	170.0	10.36%	5956.2	12.51%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.999e-03	1.0000	949.0	57.83%	29093.5	61.12%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.736e-03	1.0000	564.0	34.37%	17919.0	37.64%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.652e-03	1.0000	31.0	1.89%	1407.0	2.96%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.324e-03	1.0000	63.0	3.84%	2527.3	5.31%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-1.708e-03	1.0000	1023.0	62.34%	31302.4	65.76%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.431e-03	1.0000	7.0	0.43%	507.6	1.07%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.393e-03	1.0000	237.0	14.44%	8158.7	17.14%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.281e-03	1.0000	130.0	7.92%	4790.5	10.06%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.026e-03	1.0000	42.0	2.56%	1867.8	3.92%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-9.220e-04	1.0000	388.0	23.64%	12844.9	26.99%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-8.910e-04	1.0000	459.0	27.97%	14988.5	31.49%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-8.680e-04	1.0000	290.0	17.67%	9864.0	20.72%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-8.000e-04	1.0000	468.0	28.52%	15275.6	32.09%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-7.450e-04	1.0000	479.0	29.19%	15616.8	32.81%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.930e-04	1.0000	168.0	10.24%	6078.7	12.77%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-6.400e-04	1.0000	900.0	54.84%	27961.6	58.74%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-5.110e-04	1.0000	20.0	1.22%	1096.3	2.30%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.290e-04	1.0000	204.0	12.43%	7277.6	15.29%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-4.150e-04	1.0000	244.0	14.87%	8537.7	17.94%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.530e-04	1.0000	320.0	19.50%	10912.9	22.93%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.990e-04	1.0000	41.0	2.50%	1917.4	4.03%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-2.000e-04	1.0000	284.0	17.31%	9876.4	20.75%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-1.950e-04	1.0000	362.0	22.06%	12281.7	25.80%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.500e-05	1.0000	1403.0	85.50%	42148.9	88.55%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-6.100e-05	1.0000	165.0	10.05%	6244.3	13.12%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.000e-05	1.0000	1026.0	62.52%	31917.8	67.05%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-4.900e-05	1.0000	308.0	18.77%	10796.1	22.68%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-4.800e-05	1.0000	223.0	13.59%	8131.2	17.08%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-3.900e-05	1.0000	66.0	4.02%	2954.2	6.21%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-3.300e-05	1.0000	528.0	32.18%	17540.3	36.85%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.200e-05	1.0000	364.0	22.18%	12627.9	26.53%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.000e-05	1.0000	169.0	10.30%	6486.3	13.63%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-1.400e-05	1.0000	296.0	18.04%	10567.4	22.20%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.400e-05	1.0000	83.0	5.06%	3627.5	7.62%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.000e-06	1.0000	993.0	60.51%	31285.6	65.73%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.000e-06	1.0000	106.0	6.46%	4518.7	9.49%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-4.000e-06	1.0000	74.0	4.51%	3402.9	7.15%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.000e-06	1.0000	339.0	20.66%	12062.1	25.34%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-3.000e-06	1.0000	237.0	14.44%	8857.6	18.61%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.000e-06	1.0000	69.0	4.20%	3262.0	6.85%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.000e-06	1.0000	199.0	12.13%	7767.9	16.32%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-0.000e+00	1.0000	19.0	1.16%	1416.2	2.98%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	652.0	39.73%	21883.7	45.97%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	36.0	2.19%	2247.6	4.72%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-0.000e+00	1.0000	549.0	33.46%	19025.3	39.97%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-0.000e+00	1.0000	416.0	25.35%	14985.4	31.48%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	202.0	12.31%	8449.6	17.75%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	1138.0	69.35%	36178.8	76.01%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-0.000e+00	1.0000	123.0	7.50%	5815.2	12.22%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-0.000e+00	1.0000	463.0	28.21%	16886.1	35.48%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	18.0	1.10%	1688.9	3.55%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-0.000e+00	1.0000	335.0	20.41%	13383.4	28.12%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	208.0	12.68%	9362.7	19.67%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-0.000e+00	1.0000	192.0	11.70%	8859.1	18.61%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-0.000e+00	1.0000	242.0	14.75%	10672.9	22.42%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	44.0	2.68%	3398.1	7.14%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-0.000e+00	1.0000	430.0	26.20%	16929.3	35.57%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	0.000e+00	1.0000	513.0	31.26%	21745.9	45.68%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	0.000e+00	1.0000	576.0	35.10%	24783.9	52.07%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	817.0	49.79%	29215.6	61.38%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	437.0	26.63%	18195.0	38.22%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	265.0	16.15%	12182.0	25.59%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	427.0	26.02%	20182.5	42.40%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	975.0	59.41%	36259.5	76.18%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	0.000e+00	1.0000	1245.0	75.87%	41820.7	87.86%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	28.2	0.06%