Information for 1-ACARACAATG (Motif 1)

C G T A A T G C C G T A T C G A C G T A A T G C C G T A G T C A A G C T C T A G
Reverse Opposite:
A G T C C T G A A C G T A C G T A T C G A C G T A G C T A C G T T A C G G C A T
p-value:1e-15
log p-value:-3.660e+01
Information Content per bp:1.797
Number of Target Sequences with motif105.0
Percentage of Target Sequences with motif30.26%
Number of Background Sequences with motif6491.4
Percentage of Background Sequences with motif13.24%
Average Position of motif in Targets362.0 +/- 260.8bp
Average Position of motif in Background337.5 +/- 205.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX13/MA1120.1/Jaspar

Match Rank:1
Score:0.86
Offset:2
Orientation:forward strand
Alignment:ACARACAATG---
--AAACAATGGCA
 C G T A A T G C C G T A T C G A C G T A A T G C C G T A G T C A A G C T C T A G A C G T A C G T A C G T
A C G T A C G T C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:ACARACAATG-
-VRAACAATGG
 C G T A A T G C C G T A T C G A C G T A A T G C C G T A G T C A A G C T C T A G A C G T
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.85
Offset:2
Orientation:forward strand
Alignment:ACARACAATG--
--RAACAATGGN
 C G T A A T G C C G T A T C G A C G T A A T G C C G T A G T C A A G C T C T A G A C G T A C G T
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

SOX2/MA0143.4/Jaspar

Match Rank:4
Score:0.84
Offset:2
Orientation:forward strand
Alignment:ACARACAATG---
--AAACAATGGAA
 C G T A A T G C C G T A T C G A C G T A A T G C C G T A G T C A A G C T C T A G A C G T A C G T A C G T
A C G T A C G T C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:ACARACAATG-
-AAAACAATGG
 C G T A A T G C C G T A T C G A C G T A A T G C C G T A G T C A A G C T C T A G A C G T
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:6
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-ACARACAATG-
VVRRAACAATGG
 A C G T C G T A A T G C C G T A T C G A C G T A A T G C C G T A G T C A A G C T C T A G A C G T
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-ACARACAATG----
CTCACACAATGGCGC
 A C G T C G T A A T G C C G T A T C G A C G T A A T G C C G T A G T C A A G C T C T A G A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.82
Offset:3
Orientation:reverse strand
Alignment:ACARACAATG--
---GACAATGNN
 C G T A A T G C C G T A T C G A C G T A A T G C C G T A G T C A A G C T C T A G A C G T A C G T
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:ACARACAATG-
-VRRACAAWGG
 C G T A A T G C C G T A T C G A C G T A A T G C C G T A G T C A A G C T C T A G A C G T
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:ACARACAATG
--NAACAAT-
 C G T A A T G C C G T A T C G A C G T A A T G C C G T A G T C A A G C T C T A G
A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T