Information for 12-CCCCTTTGTC (Motif 19)

A G T C T A G C A G T C G T A C A C G T A C G T A G C T T A C G G C A T G T A C
Reverse Opposite:
C A T G C G T A A T G C C T G A T G C A C G T A A C T G C T A G A T C G C T A G
p-value:1e-6
log p-value:-1.403e+01
Information Content per bp:1.817
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif9.80%
Number of Background Sequences with motif1883.4
Percentage of Background Sequences with motif3.84%
Average Position of motif in Targets320.0 +/- 181.5bp
Average Position of motif in Background334.7 +/- 197.1bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.79
Offset:2
Orientation:forward strand
Alignment:CCCCTTTGTC--
--CCTTTGTTTT
 A G T C T A G C A G T C G T A C A C G T A C G T A G C T T A C G G C A T G T A C A C G T A C G T
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.78
Offset:2
Orientation:forward strand
Alignment:CCCCTTTGTC
--CCWTTGTY
 A G T C T A G C A G T C G T A C A C G T A C G T A G C T T A C G G C A T G T A C
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

SOX4/MA0867.2/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CCCCTTTGTC-
-NCCTTTGTTC
 A G T C T A G C A G T C G T A C A C G T A C G T A G C T T A C G G C A T G T A C A C G T
A C G T A G T C A G T C G A T C C G A T A G C T A G C T T A C G C G A T A G C T G A T C

SOX10/MA0442.2/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CCCCTTTGTC--
-NNCTTTGTTNN
 A G T C T A G C A G T C G T A C A C G T A C G T A G C T T A C G G C A T G T A C A C G T A C G T
A C G T A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CCCCTTTGTC--
--YCTTTGTTCC
 A G T C T A G C A G T C G T A C A C G T A C G T A G C T T A C G G C A T G T A C A C G T A C G T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:6
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CCCCTTTGTC---
-BCCWTTGTBYKV
 A G T C T A G C A G T C G T A C A C G T A C G T A G C T T A C G G C A T G T A C A C G T A C G T A C G T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A T G C G A C T A C T G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CCCCTTTGTC--
--CCWTTGTYYB
 A G T C T A G C A G T C G T A C A C G T A C G T A G C T T A C G G C A T G T A C A C G T A C G T
A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTTTGTC-----
ANTCCTTTGTCTNNNN
 A C G T A G T C T A G C A G T C G T A C A C G T A C G T A G C T T A C G G C A T G T A C A C G T A C G T A C G T A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CCCCTTTGTC--
--CCATTGTTTT
 A G T C T A G C A G T C G T A C A C G T A C G T A G C T T A C G G C A T G T A C A C G T A C G T
A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CCCCTTTGTC
AGGVNCCTTTGT-
 A C G T A C G T A C G T A G T C T A G C A G T C G T A C A C G T A C G T A G C T T A C G G C A T G T A C
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T