Information for 2-AGCATTGTTCTG (Motif 3)

C G T A C A T G T A G C C G T A G C A T A G C T A T C G A C G T G A C T G T A C A C G T A T C G
Reverse Opposite:
T A G C C G T A A C T G C T G A T G C A T A G C T C G A C G T A C G A T A T C G G T A C G C A T
p-value:1e-12
log p-value:-2.944e+01
Information Content per bp:1.725
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif8.65%
Number of Background Sequences with motif785.3
Percentage of Background Sequences with motif1.60%
Average Position of motif in Targets408.2 +/- 300.3bp
Average Position of motif in Background342.2 +/- 197.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX8/MA0868.2/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:AGCATTGTTCTG
-CCATTGTTCT-
 C G T A C A T G T A G C C G T A G C A T A G C T A T C G A C G T G A C T G T A C A C G T A T C G
A C G T A T G C G A T C C G T A C A G T C G A T T C A G C G A T G A C T G A T C A C G T A C G T

SOX14/MA1562.1/Jaspar

Match Rank:2
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:AGCATTGTTCTG
--CATTGTTCGG
 C G T A C A T G T A G C C G T A G C A T A G C T A T C G A C G T G A C T G T A C A C G T A T C G
A C G T A C G T G T A C T G C A C A G T A C G T T C A G C G A T G C A T G T A C C T A G A C T G

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGCATTGTTCTG
-CCATTGTTTT-
 C G T A C A T G T A G C C G T A G C A T A G C T A T C G A C G T G A C T G T A C A C G T A T C G
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGCATTGTTCTG---
TTCAATTGTTCTAAAA
 A C G T C G T A C A T G T A G C C G T A G C A T A G C T A T C G A C G T G A C T G T A C A C G T A T C G A C G T A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

PB0062.1_Sox12_1/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AGCATTGTTCTG---
-TAATTGTTCTAAAC
 C G T A C A T G T A G C C G T A G C A T A G C T A T C G A C G T G A C T G T A C A C G T A T C G A C G T A C G T A C G T
A C G T G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGCATTGTTCTG
-CCATTGTTYB-
 C G T A C A T G T A G C C G T A G C A T A G C T A T C G A C G T G A C T G T A C A C G T A T C G
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T

SOX12/MA1561.1/Jaspar

Match Rank:7
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AGCATTGTTCTG-
--NATTGTTCGGT
 C G T A C A T G T A G C C G T A G C A T A G C T A T C G A C G T G A C T G T A C A C G T A T C G A C G T
A C G T A C G T A T G C C T G A A C G T A C G T C T A G A G C T A C G T G T A C C T A G C A T G C A G T

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:8
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGCATTGTTCTG-
-CCATTGTTYYBB
 C G T A C A T G T A G C C G T A G C A T A G C T A T C G A C G T G A C T G T A C A C G T A T C G A C G T
A C G T A T G C G A T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G T C A T C G A C T G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGCATTGTTCTG
-CCATTGTTNY-
 C G T A C A T G T A G C C G T A G C A T A G C T A T C G A C G T G A C T G T A C A C G T A T C G
A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:10
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGCATTGTTCTG--
AANTTATTGTTCTNNA
 A C G T A C G T C G T A C A T G T A G C C G T A G C A T A G C T A T C G A C G T G A C T G T A C A C G T A T C G A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A