| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-11 | -2.673e+01 | 0.0000 | 160.0 | 46.11% | 13960.3 | 28.47% | motif file (matrix) |
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| 2 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-10 | -2.418e+01 | 0.0000 | 123.0 | 35.45% | 9904.1 | 20.20% | motif file (matrix) |
svg |
| 3 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-9 | -2.096e+01 | 0.0000 | 134.0 | 38.62% | 11721.5 | 23.90% | motif file (matrix) |
svg |
| 4 |
| Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer | 1e-8 | -1.943e+01 | 0.0000 | 65.0 | 18.73% | 4264.8 | 8.70% | motif file (matrix) |
svg |
| 5 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-5 | -1.376e+01 | 0.0001 | 196.0 | 56.48% | 21404.4 | 43.65% | motif file (matrix) |
svg |
| 6 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-5 | -1.323e+01 | 0.0001 | 183.0 | 52.74% | 19743.8 | 40.27% | motif file (matrix) |
svg |
| 7 |
| NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer | 1e-5 | -1.175e+01 | 0.0005 | 74.0 | 21.33% | 6302.1 | 12.85% | motif file (matrix) |
svg |
| 8 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-4 | -1.146e+01 | 0.0006 | 195.0 | 56.20% | 21899.4 | 44.66% | motif file (matrix) |
svg |
| 9 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-4 | -1.102e+01 | 0.0008 | 128.0 | 36.89% | 13030.9 | 26.58% | motif file (matrix) |
svg |
| 10 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-4 | -9.322e+00 | 0.0039 | 113.0 | 32.56% | 11564.9 | 23.59% | motif file (matrix) |
svg |
| 11 |
| Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer | 1e-3 | -9.111e+00 | 0.0044 | 196.0 | 56.48% | 22770.4 | 46.44% | motif file (matrix) |
svg |
| 12 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-3 | -8.061e+00 | 0.0116 | 66.0 | 19.02% | 6110.5 | 12.46% | motif file (matrix) |
svg |
| 13 |
| CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer | 1e-3 | -7.207e+00 | 0.0251 | 53.0 | 15.27% | 4778.7 | 9.75% | motif file (matrix) |
svg |
| 14 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.133e+00 | 0.0251 | 137.0 | 39.48% | 15365.2 | 31.34% | motif file (matrix) |
svg |
| 15 |
| c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.581e+00 | 0.0407 | 46.0 | 13.26% | 4104.3 | 8.37% | motif file (matrix) |
svg |
| 16 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-2 | -5.839e+00 | 0.0800 | 113.0 | 32.56% | 12652.4 | 25.80% | motif file (matrix) |
svg |
| 17 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-2 | -5.645e+00 | 0.0915 | 196.0 | 56.48% | 24084.0 | 49.12% | motif file (matrix) |
svg |
| 18 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-2 | -5.611e+00 | 0.0915 | 120.0 | 34.58% | 13662.4 | 27.86% | motif file (matrix) |
svg |
| 19 |
| CRE(bZIP)/Promoter/Homer | 1e-2 | -5.522e+00 | 0.0926 | 32.0 | 9.22% | 2733.1 | 5.57% | motif file (matrix) |
svg |
| 20 |
| JunD(bZIP)/K562-JunD-ChIP-Seq/Homer | 1e-2 | -5.474e+00 | 0.0926 | 17.0 | 4.90% | 1158.7 | 2.36% | motif file (matrix) |
svg |
| 21 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-2 | -5.329e+00 | 0.1016 | 277.0 | 79.83% | 36144.2 | 73.71% | motif file (matrix) |
svg |
| 22 |
| Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -4.870e+00 | 0.1535 | 48.0 | 13.83% | 4740.3 | 9.67% | motif file (matrix) |
svg |
| 23 |
| Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.841e+00 | 0.1535 | 82.0 | 23.63% | 8991.7 | 18.34% | motif file (matrix) |
svg |
| 24 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-2 | -4.699e+00 | 0.1669 | 134.0 | 38.62% | 15920.9 | 32.47% | motif file (matrix) |
svg |
| 25 |
| ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer | 1e-2 | -4.634e+00 | 0.1709 | 19.0 | 5.48% | 1474.0 | 3.01% | motif file (matrix) |
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