Information for 1-ATGAGTCATA (Motif 1)


Reverse Opposite:

p-value:1e-14
log p-value:-3.413e+01
Information Content per bp:1.692
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif43.93%
Number of Background Sequences with motif6287.6
Percentage of Background Sequences with motif12.70%
Average Position of motif in Targets322.9 +/- 169.3bp
Average Position of motif in Background344.2 +/- 212.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:ATGAGTCATA
ATGASTCATH

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-ATGAGTCATA
GATGAGTCAT-

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:3
Score:0.96
Offset:-2
Orientation:forward strand
Alignment:--ATGAGTCATA
NNATGASTCATH

Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer

Match Rank:4
Score:0.96
Offset:-2
Orientation:reverse strand
Alignment:--ATGAGTCATA
NDATGASTCATH

Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.96
Offset:-2
Orientation:reverse strand
Alignment:--ATGAGTCATA
NNATGAGTCATN

Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer

Match Rank:6
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-ATGAGTCATA-
NATGASTCABNN

MA0491.1_JUND/Jaspar

Match Rank:7
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-ATGAGTCATA
NATGAGTCACN

MA0476.1_FOS/Jaspar

Match Rank:8
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-ATGAGTCATA
NATGAGTCANN

MA0489.1_JUN_(var.2)/Jaspar

Match Rank:9
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:ATGAGTCATA----
ATGAGTCATNTNNT

MA0490.1_JUNB/Jaspar

Match Rank:10
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:ATGAGTCATA-
ATGAGTCATCN