Information for 8-GAGAACAATT (Motif 10)


Reverse Opposite:

p-value:1e-6
log p-value:-1.570e+01
Information Content per bp:1.841
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif10.28%
Number of Background Sequences with motif634.6
Percentage of Background Sequences with motif1.28%
Average Position of motif in Targets303.5 +/- 195.6bp
Average Position of motif in Background330.7 +/- 201.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0062.1_Sox12_1/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---GAGAACAATT-
NTTNAGAACAATTA

PB0072.1_Sox5_1/Jaspar

Match Rank:2
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--GAGAACAATT----
TTTAGAACAATAAAAT

PB0067.1_Sox18_1/Jaspar

Match Rank:3
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---GAGAACAATT---
NNTNANAACAATTNNA

PB0063.1_Sox13_1/Jaspar

Match Rank:4
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GAGAACAATT----
TTAAGAACAATAAATT

PB0065.1_Sox15_1/Jaspar

Match Rank:5
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GAGAACAATT-----
TAGTGAACAATAGATTT

PB0173.1_Sox21_2/Jaspar

Match Rank:6
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---GAGAACAATT----
NNNNNGAACAATTGANN

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GAGAACAATT-----
TNNAGAACAATANATNN

PB0172.1_Sox1_2/Jaspar

Match Rank:8
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GAGAACAATT----
NNNTAACAATTATAN

PB0165.1_Sox11_2/Jaspar

Match Rank:9
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GAGAACAATT--
NNCNNAACAATTNT

MA0087.1_Sox5/Jaspar

Match Rank:10
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GAGAACAATT
--NAACAAT-