Information for 6-CTGTGCTCTGCC (Motif 13)


Reverse Opposite:

p-value:1e-6
log p-value:-1.430e+01
Information Content per bp:1.740
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif20.56%
Number of Background Sequences with motif3075.3
Percentage of Background Sequences with motif6.21%
Average Position of motif in Targets304.4 +/- 174.8bp
Average Position of motif in Background333.8 +/- 221.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0512.1_Rxra/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGTGCTCTGCC
NCTGACCTTTG--

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CTGTGCTCTGCC
----GCTCCG--

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CTGTGCTCTGCC-
CGAACAGTGCTCACTAT

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTGTGCTCTGCC
CTGTTCCTGG--

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTGTGCTCTGCC
CTGTGGTTTN--

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTGTGCTCTGCC
---NGCTN----

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTGTGCTCTGCC
CTGACCTTTG--

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTGTGCTCTGCC
GCTGTGGTTT---

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGTGCTCTGCC---
-TGACCTTTGCCCTA

MA0002.2_RUNX1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTGTGCTCTGCC
GTCTGTGGTTT---