Information for 5-CGCWTTGT (Motif 15)


Reverse Opposite:

p-value:1e-5
log p-value:-1.231e+01
Information Content per bp:1.526
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif43.93%
Number of Background Sequences with motif11854.4
Percentage of Background Sequences with motif23.94%
Average Position of motif in Targets385.0 +/- 219.0bp
Average Position of motif in Background341.7 +/- 212.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:1
Score:0.91
Offset:1
Orientation:forward strand
Alignment:CGCWTTGT---
-CCWTTGTYYB

MA0442.1_SOX10/Jaspar

Match Rank:2
Score:0.91
Offset:2
Orientation:forward strand
Alignment:CGCWTTGT
--CTTTGT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.87
Offset:1
Orientation:forward strand
Alignment:CGCWTTGT-
-CCWTTGTY

MA0515.1_Sox6/Jaspar

Match Rank:4
Score:0.85
Offset:1
Orientation:forward strand
Alignment:CGCWTTGT---
-CCATTGTTTT

MA0078.1_Sox17/Jaspar

Match Rank:5
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CGCWTTGT-
CTCATTGTC

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.83
Offset:1
Orientation:forward strand
Alignment:CGCWTTGT---
-CCATTGTTNY

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.83
Offset:1
Orientation:forward strand
Alignment:CGCWTTGT---
-YCTTTGTTCC

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CGCWTTGT--
NCCATTGTTC

PB0132.1_Hbp1_2/Jaspar

Match Rank:9
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----CGCWTTGT-----
TGTTCCCATTGTGTACT

MA0143.3_Sox2/Jaspar

Match Rank:10
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CGCWTTGT-
-CCTTTGTT