Information for 12-CAGACCCTTT (Motif 16)


Reverse Opposite:

p-value:1e-5
log p-value:-1.200e+01
Information Content per bp:1.827
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif13.08%
Number of Background Sequences with motif1537.0
Percentage of Background Sequences with motif3.10%
Average Position of motif in Targets216.8 +/- 182.7bp
Average Position of motif in Background336.5 +/- 207.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAGACCCTTT
AAGATATCCTT-

PH0163.1_Six3/Jaspar

Match Rank:2
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------CAGACCCTTT-
ANANGTGATACCCTATN

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CAGACCCTTT---
-----CCWTTGTY

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAGACCCTTT
GGCCACACCCAN-

MA0143.3_Sox2/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CAGACCCTTT---
-----CCTTTGTT

PB0059.1_Six6_1/Jaspar

Match Rank:6
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------CAGACCCTTT-
ANANNTGATACCCNATN

PB0203.1_Zfp691_2/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CAGACCCTTT----
TACGAGACTCCTCTAAC

PB0040.1_Lef1_1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAGACCCTTT--------
-AATCCCTTTGATCTATC

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CAGACCCTTT-----
-----CCTTTGATGT

PH0165.1_Six6_1/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CAGACCCTTT-
ANANNTGATACCCTATN