Information for 13-TAAAWAGCAA (Motif 17)


Reverse Opposite:

p-value:1e-5
log p-value:-1.197e+01
Information Content per bp:1.849
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif20.56%
Number of Background Sequences with motif3548.1
Percentage of Background Sequences with motif7.17%
Average Position of motif in Targets381.7 +/- 254.7bp
Average Position of motif in Background335.8 +/- 218.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TAAAWAGCAA----
CCGCATAGCAACGGA

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TAAAWAGCAA----
TACCATAGCAACGGT

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TAAAWAGCAA--------
TGTGACCCTTAGCAACCGATTAA

PB0093.1_Zfp105_1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TAAAWAGCAA---
AACAAACAACAAGAG

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TAAAWAGCAA----
AAAAATAACAAACGG

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TAAAWAGCAA---
-SCCTAGCAACAG

PB0155.1_Osr2_2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TAAAWAGCAA--
NNTGTAGGTAGCANNT

PB0073.1_Sox7_1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TAAAWAGCAA----------
AATAAAGAACAATAGAATTTCA

PH0006.1_Barhl2/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TAAAWAGCAA-------
-AAAAACCAATTAAGAA

MA0084.1_SRY/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TAAAWAGCAA-
--GTAAACAAT