Information for 9-ATCAGCYRATGG (Motif 20)


Reverse Opposite:

p-value:1e-3
log p-value:-8.829e+00
Information Content per bp:1.876
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif1.87%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets196.5 +/- 100.1bp
Average Position of motif in Background314.5 +/- 206.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0117.1_Mafb/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATCAGCYRATGG
NCGTCAGC------

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ATCAGCYRATGG
-HCAGCTGDTN-

MA0595.1_SREBF1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATCAGCYRATGG
ATCACCCCAC--

MA0596.1_SREBF2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ATCAGCYRATGG
ATCACCCCAT--

MA0496.1_MAFK/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATCAGCYRATGG
CTGAGTCAGCAATTT-

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ATCAGCYRATGG-
---AGCCAATCGG

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ATCAGCYRATGG
--CAGCTGTT--

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ATCAGCYRATGG
AGCAGCTGCTNN

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:ATCAGCYRATGG
--CAGCC-----

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---ATCAGCYRATGG
HWWGTCAGCAWWTTT