Information for 6-CTTGAAAG (Motif 21)


Reverse Opposite:

p-value:1e-3
log p-value:-8.763e+00
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif11.21%
Number of Background Sequences with motif1570.2
Percentage of Background Sequences with motif3.17%
Average Position of motif in Targets334.6 +/- 203.4bp
Average Position of motif in Background347.2 +/- 212.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTTGAAAG-
ACATCAAAGG

MA0523.1_TCF7L2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CTTGAAAG---
AAAGATCAAAGGAA

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.70
Offset:-7
Orientation:forward strand
Alignment:-------CTTGAAAG--
ATAACCACTTGAAAATT

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTTGAAAG-
ACWTCAAAGG

MA0463.1_Bcl6/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTTGAAAG--
TTTCCTAGAAAGCA

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTTGAAAG
CGGTTTCAAA-

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTTGAAAG---
ACATCAAAGGNA

PB0006.1_Bcl6b_1/Jaspar

Match Rank:8
Score:0.66
Offset:-7
Orientation:reverse strand
Alignment:-------CTTGAAAG-
NNNATTCCTCGAAAGN

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTTGAAAG--
ACTGAAACCA

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTGAAAG---
CTTGAGTGGCT