Information for 4-ATTTGAATAA (Motif 4)


Reverse Opposite:

p-value:1e-9
log p-value:-2.165e+01
Information Content per bp:1.829
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif20.56%
Number of Background Sequences with motif2030.6
Percentage of Background Sequences with motif4.10%
Average Position of motif in Targets372.1 +/- 238.4bp
Average Position of motif in Background342.4 +/- 213.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:ATTTGAATAA
ATTTGCATAA

PH0144.1_Pou2f2/Jaspar

Match Rank:2
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGAATAA--
TNTAATTTGCATANNN

PH0145.1_Pou2f3/Jaspar

Match Rank:3
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGAATAA--
TNTAATTTGCATACNA

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:ATTTGAATAA
ATTTGCATAT

MA0507.1_POU2F2/Jaspar

Match Rank:5
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---ATTTGAATAA
TTCATTTGCATAT

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:ATTTGAATAA-----
ATTTGCATAACAATG

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ATTTGAATAA-
-TTTGAAACCG

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:ATTTGAATAA-----
ATTTGCATAACAAAG

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATTTGAATAA----
AAAATATGCATAATAAA

PB0079.1_Sry_1/Jaspar

Match Rank:10
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ATTTGAATAA--
TATAATTATAATATTC