Information for 3-GTACAAAAGAAT (Motif 5)


Reverse Opposite:

p-value:1e-9
log p-value:-2.090e+01
Information Content per bp:1.882
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif6.54%
Number of Background Sequences with motif83.6
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets268.9 +/- 125.1bp
Average Position of motif in Background339.8 +/- 228.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTACAAAAGAAT---
GTATAAAAGGCGGGG

MA0108.2_TBP/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTACAAAAGAAT---
GTATAAAAGGCGGGG

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GTACAAAAGAAT
GNCTATAAAAGG--

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTACAAAAGAAT
AAACAGACAAAGGAAT

PB0074.1_Sox8_1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTACAAAAGAAT------
-TNNAGAACAATANATNN

PB0067.1_Sox18_1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTACAAAAGAAT----
NNTNANAACAATTNNA

MA0514.1_Sox3/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GTACAAAAGAAT
AAAACAAAGG---

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTACAAAAGAAT--
NTTNAGAACAATTA

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GTACAAAAGAAT-
AGAAGAACAAAGGACTA

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GTACAAAAGAAT
CAATTGCAAAAATAT