Information for 4-AGTAAGCACAGT (Motif 6)


Reverse Opposite:

p-value:1e-8
log p-value:-1.908e+01
Information Content per bp:1.901
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif5.61%
Number of Background Sequences with motif60.8
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets234.3 +/- 143.6bp
Average Position of motif in Background375.0 +/- 240.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGTAAGCACAGT
--AAACCACAGC

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGTAAGCACAGT
-NAAACCACAG-

MA0481.1_FOXP1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGTAAGCACAGT
CAAAAGTAAACAAAG-

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGTAAGCACAGT---
NNNNTGAGCACTGTNNG

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGTAAGCACAGT
-CCAGGAACAG-

MA0002.2_RUNX1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGTAAGCACAGT-
--AAACCACAGAN

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:AGTAAGCACAGT
------CACAGN

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGTAAGCACAGT
TGAGTCAGCA----

MA0593.1_FOXP2/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGTAAGCACAGT
AAGTAAACAAA--

PB0041.1_Mafb_1/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----AGTAAGCACAGT-
NCTANGTCAGCAAATTT