Information for 5-TAATTAGCTT (Motif 7)


Reverse Opposite:

p-value:1e-7
log p-value:-1.827e+01
Information Content per bp:1.785
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif14.95%
Number of Background Sequences with motif1238.0
Percentage of Background Sequences with motif2.50%
Average Position of motif in Targets333.7 +/- 161.4bp
Average Position of motif in Background338.3 +/- 221.7bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0074.1_Hoxd1/Jaspar

Match Rank:1
Score:0.87
Offset:-5
Orientation:forward strand
Alignment:-----TAATTAGCTT--
TAAACTAATTAGCTGTA

PH0045.1_Hoxa1/Jaspar

Match Rank:2
Score:0.87
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAGCTT--
ACGGTAATTAGCTCAG

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGCTT
YTAATTAVHT-

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:4
Score:0.84
Offset:0
Orientation:forward strand
Alignment:TAATTAGCTT
TAATTAGN--

PB0031.1_Hoxa3_1/Jaspar

Match Rank:5
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAGCTT--
GTTAATTANCTCNN

PH0094.1_Lhx4/Jaspar

Match Rank:6
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----TAATTAGCTT--
TAAACTAATTAGCTTTG

PH0052.1_Hoxa5/Jaspar

Match Rank:7
Score:0.83
Offset:-6
Orientation:reverse strand
Alignment:------TAATTAGCTT
NTGAGCTAATTACCNT

PH0001.1_Alx3/Jaspar

Match Rank:8
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----TAATTAGCTT--
TAAACTAATTAGCTGAG

PH0155.1_Prrx2/Jaspar

Match Rank:9
Score:0.82
Offset:-6
Orientation:reverse strand
Alignment:------TAATTAGCTT-
NTTCGCTAATTAGCTNT

PH0058.1_Hoxb3/Jaspar

Match Rank:10
Score:0.82
Offset:-6
Orientation:reverse strand
Alignment:------TAATTAGCTT-
TNNNACTAATTAGNTCA