Information for 6-AGAAAAGCTC (Motif 8)


Reverse Opposite:

p-value:1e-7
log p-value:-1.826e+01
Information Content per bp:1.709
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif43.93%
Number of Background Sequences with motif9780.5
Percentage of Background Sequences with motif19.75%
Average Position of motif in Targets427.2 +/- 216.8bp
Average Position of motif in Background339.4 +/- 211.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGAAAAGCTC-
ANGNAAAGGTCA

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGAAAAGCTC-----
TCTCAAAGGTCACCTG

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGAAAAGCTC-----
TCTCAAAGGTCACGAG

MA0164.1_Nr2e3/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AGAAAAGCTC-
----AAGCTTG

MA0152.1_NFATC2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGAAAAGCTC
TGGAAAA----

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGAAAAGCTC
--AACAGCTG

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AGAAAAGCTC
GNCTATAAAAGG--

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGAAAAGCTC
NCYAATAAAA----

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AGAAAAGCTC
----CAGCC-

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.56
Offset:6
Orientation:forward strand
Alignment:AGAAAAGCTC--
------GCTCCG