Information for 12-GCATTTAAAT (Motif 12)


Reverse Opposite:

p-value:1e-15
log p-value:-3.516e+01
Information Content per bp:1.652
Number of Target Sequences with motif464.0
Percentage of Target Sequences with motif39.76%
Number of Background Sequences with motif13862.1
Percentage of Background Sequences with motif28.76%
Average Position of motif in Targets312.1 +/- 210.8bp
Average Position of motif in Background298.0 +/- 186.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCATTTAAAT
NGCAATTAAA-

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GCATTTAAAT---
ACAAGCAATTAATGAAT

PH0043.1_Hmx3/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GCATTTAAAT---
ACAAGCAATTAAAGAAT

PH0042.1_Hmx2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCATTTAAAT---
ACAAGCAATTAAAGAAT

MA0063.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCATTTAAAT
-CAATTAA--

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:6
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCATTTAAAT---
---TTTGAAACCG

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCATTTAAAT
BCMATTAG--

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCATTTAAAT----
AATGCAATAAAATTTAT

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCATTTAAAT--
CCTTTTATAGNC

MA0507.1_POU2F2/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCATTTAAAT--
TTCATTTGCATAT