Information for 11-AATTATGCCTCT (Motif 13)


Reverse Opposite:

p-value:1e-15
log p-value:-3.471e+01
Information Content per bp:1.710
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif6.34%
Number of Background Sequences with motif1039.4
Percentage of Background Sequences with motif2.16%
Average Position of motif in Targets305.0 +/- 226.9bp
Average Position of motif in Background305.5 +/- 185.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AATTATGCCTCT
TGAATTATGCAT--

MA0075.1_Prrx2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AATTATGCCTCT
AATTA-------

PH0022.1_Dlx3/Jaspar

Match Rank:3
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AATTATGCCTCT
NNNGGTAATTATNGNGN-

PB0176.1_Sox5_2/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----AATTATGCCTCT
NNCTNAATTATGANN--

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AATTATGCCTCT
AATTATT-----

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AATTATGCCTCT---
TNNATTATGCATANNTT

MA0125.1_Nobox/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AATTATGCCTCT
ACCAATTA-------

PH0021.1_Dlx2/Jaspar

Match Rank:8
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------AATTATGCCTCT
CTGANNTAATTATNNN---

PH0175.1_Vax2/Jaspar

Match Rank:9
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------AATTATGCCTCT
GTGCACTAATTAAGAC---

PH0023.1_Dlx4/Jaspar

Match Rank:10
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------AATTATGCCTCT
GTCGGTAATTATNGNGN-