Information for 17-AGGCTTCS (Motif 16)


Reverse Opposite:

p-value:1e-14
log p-value:-3.301e+01
Information Content per bp:1.707
Number of Target Sequences with motif540.0
Percentage of Target Sequences with motif46.27%
Number of Background Sequences with motif16962.8
Percentage of Background Sequences with motif35.20%
Average Position of motif in Targets333.3 +/- 234.1bp
Average Position of motif in Background298.0 +/- 185.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:AGGCTTCS
--GCTTCC

MA0164.1_Nr2e3/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGGCTTCS
CAAGCTT--

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AGGCTTCS
-NGCTN--

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AGGCTTCS
--GCTCCG

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGGCTTCS
CNAGGCCT--

MA0146.2_Zfx/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTTCS-----
CAGGCCNNGGCCNN

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGGCTTCS
CTAGGCCT--

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGCTTCS
TWGTCTGV-

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGGCTTCS-
-GGCGCGCT

PB0154.1_Osr1_2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGGCTTCS------
ACATGCTACCTAATAC