Information for 18-TRTTCCHACG (Motif 17)


Reverse Opposite:

p-value:1e-13
log p-value:-3.126e+01
Information Content per bp:1.848
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif2.83%
Number of Background Sequences with motif255.5
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets295.6 +/- 221.6bp
Average Position of motif in Background310.1 +/- 189.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:TRTTCCHACG
HTTTCCCASG

MA0152.1_NFATC2/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TRTTCCHACG
TTTTCCA---

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TRTTCCHACG-
CTGTTGCTAGGS

MA0510.1_RFX5/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TRTTCCHACG---
NCTGTTGCCAGGGAG

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TRTTCCHACG
CTGTTCCTGG-

PB0114.1_Egr1_2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TRTTCCHACG-----
NNAGTCCCACTCNNNN

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TRTTCCHACG
NYTTCCCGCC

PB0044.1_Mtf1_1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TRTTCCHACG----
NNTTTGCACACGGCCC

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TRTTCCHACG---
NNCGTTGCTATGGNN

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------TRTTCCHACG-------
NTNNNNNGTTGCTANGGNNCANA