Information for 2-GCTAAAAATAGC (Motif 2)


Reverse Opposite:

p-value:1e-48
log p-value:-1.122e+02
Information Content per bp:1.593
Number of Target Sequences with motif416.0
Percentage of Target Sequences with motif35.65%
Number of Background Sequences with motif8449.7
Percentage of Background Sequences with motif17.53%
Average Position of motif in Targets311.6 +/- 201.7bp
Average Position of motif in Background299.6 +/- 183.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0052.2_MEF2A/Jaspar

Match Rank:1
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-GCTAAAAATAGC--
AGCTAAAAATAGCAT

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.92
Offset:0
Orientation:forward strand
Alignment:GCTAAAAATAGC
DCYAAAAATAGM

MA0497.1_MEF2C/Jaspar

Match Rank:3
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--GCTAAAAATAGC-
ATGCTAAAAATAGAA

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.86
Offset:1
Orientation:forward strand
Alignment:GCTAAAAATAGC
-CCAAAAATAG-

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCTAAAAATAGC
-CCATATATGG-

MA0033.1_FOXL1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCTAAAAATAGC
--TATACATA--

PB0146.1_Mafk_2/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCTAAAAATAGC----
-GAAAAAATTGCAAGG

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCTAAAAATAGC----
-GTATAAAAGGCGGGG

MA0108.2_TBP/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCTAAAAATAGC----
-GTATAAAAGGCGGGG

MA0087.1_Sox5/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCTAAAAATAGC
--NAACAAT---