Information for 23-ATGAKACGDG (Motif 21)


Reverse Opposite:

p-value:1e-8
log p-value:-1.847e+01
Information Content per bp:1.644
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif3.86%
Number of Background Sequences with motif703.1
Percentage of Background Sequences with motif1.46%
Average Position of motif in Targets296.4 +/- 216.3bp
Average Position of motif in Background295.6 +/- 188.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATGAKACGDG-
-GGGTACGTGC

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----ATGAKACGDG--
CTACTTGGATACGGAAT

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:ATGAKACGDG-
---RTACGTGC

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:ATGAKACGDG--
----TACGTGCV

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ATGAKACGDG
NAGATAAGNN

MA0482.1_Gata4/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ATGAKACGDG
NNGAGATAAGA-

PB0023.1_Gata6_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----ATGAKACGDG---
TATAGAGATAAGAATTG

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ATGAKACGDG
CAGATAAGGN

PB0022.1_Gata5_1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----ATGAKACGDG---
TAAACTGATAAGAAGAT

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:ATGAKACGDG-
---GGACGTGC