Information for 22-GCTCAGTGCAGG (Motif 23)


Reverse Opposite:

p-value:1e-5
log p-value:-1.297e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets354.4 +/- 116.7bp
Average Position of motif in Background39.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0122.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCTCAGTGCAGG
-TTAAGTGGA--

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCTCAGTGCAGG---
AATCGCACTGCATTCCG

PB0199.1_Zfp161_2/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCTCAGTGCAGG
GCCGCGCAGTGCGT-

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GCTCAGTGCAGG---
---CACAGCAGGGGG

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCTCAGTGCAGG---
CCACACAGCAGGAGA

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GCTCAGTGCAGG
GCTCCG------

MA0512.1_Rxra/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCTCAGTGCAGG
-CAAAGGTCAGA

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GCTCAGTGCAGG---
GAGCACAGCAGGACA

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GCTCAGTGCAGG
NGCTN--------

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GCTCAGTGCAGG---
GGTCANYTGAGGWCA