Information for 24-CATGTTGCGA (Motif 24)


Reverse Opposite:

p-value:1e-5
log p-value:-1.222e+01
Information Content per bp:1.648
Number of Target Sequences with motif129.0
Percentage of Target Sequences with motif11.05%
Number of Background Sequences with motif3571.3
Percentage of Background Sequences with motif7.41%
Average Position of motif in Targets309.2 +/- 223.0bp
Average Position of motif in Background300.5 +/- 184.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0086.1_Irx5/Jaspar

Match Rank:1
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------CATGTTGCGA
ANTNNTACATGTANNTN

PH0085.1_Irx4/Jaspar

Match Rank:2
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------CATGTTGCGA
NNTTTTACATGTANNNT

PH0084.1_Irx3_2/Jaspar

Match Rank:3
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------CATGTTGCGA
NNTATTACATGTANNNT

PH0082.1_Irx2/Jaspar

Match Rank:4
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------CATGTTGCGA
ANTNTTACATGTATNTA

PH0083.1_Irx3_1/Jaspar

Match Rank:5
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------CATGTTGCGA
ANTATTACATGTANNNN

MA0095.2_YY1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CATGTTGCGA
GCNGCCATCTTG---

PB0002.1_Arid5a_1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CATGTTGCGA--
CTAATATTGCTAAA

PH0087.1_Irx6/Jaspar

Match Rank:8
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CATGTTGCGA-
AAAATACATGTAAAAAT

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CATGTTGCGA-----
ANATTTTACGAGNNNN

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CATGTTGCGA--
TCNCCTGCTGNGNNN