Information for 23-CCTGCTGGAGAG (Motif 26)


Reverse Opposite:

p-value:1e-1
log p-value:-3.851e+00
Information Content per bp:1.976
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif24.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets349.7 +/- 119.9bp
Average Position of motif in Background258.4 +/- 183.1bp
Strand Bias (log2 ratio + to - strand density)3.9
Multiplicity (# of sites on avg that occur together)5.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGAGAG
CCCCCTGCTGTG---

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGAGAG
TNTCCTGCTGTGNNG

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGAGAG
TCNCCTGCTGNGNNN

MA0461.1_Atoh1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCTGCTGGAGAG
GCCATCTG-----

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CCTGCTGGAGAG--
----CTYRAGTGSY

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CCTGCTGGAGAG---
----CTTGAGTGGCT

MA0139.1_CTCF/Jaspar

Match Rank:7
Score:0.55
Offset:-8
Orientation:reverse strand
Alignment:--------CCTGCTGGAGAG
TAGCGCCCCCTGGTGGCCA-

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCTGCTGGAGAG
ANCAGCTG-----

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGAGAG
NNTCCTGCTGTGNNN

MA0463.1_Bcl6/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCTGCTGGAGAG--
TTTCCTAGAAAGCA