Information for 25-TGTATACAATGA (Motif 28)


Reverse Opposite:

p-value:1e-1
log p-value:-3.052e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets236.1 +/- 129.7bp
Average Position of motif in Background319.4 +/- 60.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)16.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---TGTATACAATGA
ATTTGCATACAATGG

PB0018.1_Foxk1_1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TGTATACAATGA-
AAAATGTAAACAAACAG

MA0084.1_SRY/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGTATACAATGA
-GTAAACAAT--

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGTATACAATGA-----
NNTNNACAATGGGANNN

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TGTATACAATGA---
CTCACACAATGGCGC

PB0019.1_Foxl1_1/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TGTATACAATGA-
TAAATGTAAACAAAGGT

PB0015.1_Foxa2_1/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TGTATACAATGA-
AAAAAGTAAACAAAGAC

MA0442.1_SOX10/Jaspar

Match Rank:8
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:TGTATACAATGA
-----ACAAAG-

MA0078.1_Sox17/Jaspar

Match Rank:9
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TGTATACAATGA-
----GACAATGNN

MA0157.1_FOXO3/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGTATACAATGA
TGTAAACA----