Information for 5-CTGTCAGM (Motif 4)


Reverse Opposite:

p-value:1e-27
log p-value:-6.311e+01
Information Content per bp:1.803
Number of Target Sequences with motif470.0
Percentage of Target Sequences with motif40.27%
Number of Background Sequences with motif12325.5
Percentage of Background Sequences with motif25.57%
Average Position of motif in Targets310.9 +/- 203.8bp
Average Position of motif in Background299.5 +/- 183.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:1
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--CTGTCAGM
VGCTGWCAVB

MA0498.1_Meis1/Jaspar

Match Rank:2
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--CTGTCAGM-----
AGCTGTCACTCACCT

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.81
Offset:-6
Orientation:reverse strand
Alignment:------CTGTCAGM---
NNNCAGCTGTCAATATN

PH0141.1_Pknox2/Jaspar

Match Rank:4
Score:0.81
Offset:-6
Orientation:forward strand
Alignment:------CTGTCAGM--
AAGCACCTGTCAATAT

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:5
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCAGM---
SCTGTCARCACC

PH0105.1_Meis3/Jaspar

Match Rank:6
Score:0.80
Offset:-6
Orientation:forward strand
Alignment:------CTGTCAGM--
AATTACCTGTCAATAC

PH0102.1_Meis1/Jaspar

Match Rank:7
Score:0.78
Offset:-6
Orientation:forward strand
Alignment:------CTGTCAGM--
AACGAGCTGTCAATAC

PH0104.1_Meis2/Jaspar

Match Rank:8
Score:0.78
Offset:-6
Orientation:forward strand
Alignment:------CTGTCAGM--
AAAGACCTGTCAATAC

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.78
Offset:-6
Orientation:forward strand
Alignment:------CTGTCAGM--
AAAGACCTGTCAATCC

PH0170.1_Tgif2/Jaspar

Match Rank:10
Score:0.77
Offset:-6
Orientation:forward strand
Alignment:------CTGTCAGM--
AACTAGCTGTCAATAC