Information for 1-GASCCATTGT (Motif 1)


Reverse Opposite:

p-value:1e-53
log p-value:-1.233e+02
Information Content per bp:1.615
Number of Target Sequences with motif284.0
Percentage of Target Sequences with motif74.54%
Number of Background Sequences with motif17478.9
Percentage of Background Sequences with motif35.51%
Average Position of motif in Targets336.9 +/- 184.6bp
Average Position of motif in Background314.0 +/- 192.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.86
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.93
Offset:3
Orientation:forward strand
Alignment:GASCCATTGT-
---CCWTTGTY

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.93
Offset:3
Orientation:forward strand
Alignment:GASCCATTGT---
---CCATTGTTNY

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.93
Offset:3
Orientation:forward strand
Alignment:GASCCATTGT---
---CCWTTGTYYB

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.91
Offset:2
Orientation:forward strand
Alignment:GASCCATTGT--
--NCCATTGTTC

MA0442.1_SOX10/Jaspar

Match Rank:5
Score:0.91
Offset:4
Orientation:forward strand
Alignment:GASCCATTGT
----CTTTGT

MA0078.1_Sox17/Jaspar

Match Rank:6
Score:0.91
Offset:2
Orientation:forward strand
Alignment:GASCCATTGT-
--CTCATTGTC

MA0143.3_Sox2/Jaspar

Match Rank:7
Score:0.91
Offset:3
Orientation:forward strand
Alignment:GASCCATTGT-
---CCTTTGTT

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:GASCCATTGT-----
NNNCCATTGTGTNAN

MA0515.1_Sox6/Jaspar

Match Rank:9
Score:0.89
Offset:3
Orientation:forward strand
Alignment:GASCCATTGT---
---CCATTGTTTT

MA0077.1_SOX9/Jaspar

Match Rank:10
Score:0.88
Offset:3
Orientation:forward strand
Alignment:GASCCATTGT--
---CCATTGTTC