Information for 15-TGTGGTCAGCAG (Motif 14)


Reverse Opposite:

p-value:1e-7
log p-value:-1.685e+01
Information Content per bp:1.718
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif11.29%
Number of Background Sequences with motif2221.8
Percentage of Background Sequences with motif4.51%
Average Position of motif in Targets307.2 +/- 196.1bp
Average Position of motif in Background307.4 +/- 189.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TGTGGTCAGCAG
NNHTGTGGTTWN---

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGTGGTCAGCAG
CTGTGGTTTN---

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGTGGTCAGCAG
GCTGTGGTTT----

MA0511.1_RUNX2/Jaspar

Match Rank:4
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------TGTGGTCAGCAG
GGGGTTTGTGGTTTG---

MA0002.2_RUNX1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGTGGTCAGCAG
GTCTGTGGTTT----

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGTGGTCAGCAG
-TGAGTCAGCA-

PB0041.1_Mafb_1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGTGGTCAGCAG----
NCTANGTCAGCAAATTT

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGTGGTCAGCAG----
-HWWGTCAGCAWWTTT

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGTGGTCAGCAG
NNTGTGGTTT----

PB0057.1_Rxra_1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGTGGTCAGCAG-
NTNNNGGGGTCANGNNN