Information for 16-CAGTCTTTCTCC (Motif 15)


Reverse Opposite:

p-value:1e-7
log p-value:-1.636e+01
Information Content per bp:1.735
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif9.71%
Number of Background Sequences with motif1779.7
Percentage of Background Sequences with motif3.62%
Average Position of motif in Targets332.6 +/- 245.6bp
Average Position of motif in Background310.3 +/- 192.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAGTCTTTCTCC-
---YCTTTGTTCC

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAGTCTTTCTCC-
CTGTCTGTCACCT

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAGTCTTTCTCC-
-TGTCTGDCACCT

MA0442.1_SOX10/Jaspar

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CAGTCTTTCTCC
----CTTTGT--

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAGTCTTTCTCC-
---CCWTTGTYYB

MA0514.1_Sox3/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAGTCTTTCTCC-
---CCTTTGTTTT

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAGTCTTTCTCC---
---ACTTTCACTTTC

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CAGTCTTTCTCC----
ANTCCTTTGTCTNNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCTTTCTCC----
TNNTCCTTTGTTCTNNT

PB0141.1_Isgf3g_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CAGTCTTTCTCC
NNGTANTGTTTTNC-