Information for 18-TAGDCATARAGA (Motif 18)


Reverse Opposite:

p-value:1e-6
log p-value:-1.407e+01
Information Content per bp:1.705
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif9.45%
Number of Background Sequences with motif1875.6
Percentage of Background Sequences with motif3.81%
Average Position of motif in Targets318.1 +/- 190.7bp
Average Position of motif in Background315.5 +/- 187.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0129.1_Glis2_2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TAGDCATARAGA
AATATTAATAAAGA

MA0465.1_CDX2/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TAGDCATARAGA
AAGCCATAAAA-

MA0033.1_FOXL1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TAGDCATARAGA
TATACATA----

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TAGDCATARAGA-----
WNAGTCADAVTGAAACTN

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TAGDCATARAGA---
---GGTTAGAGACCT

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TAGDCATARAGA-
AAAATATGCATAATAAA

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TAGDCATARAGA
--GTCATAAAAN

PB0139.1_Irf5_2/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TAGDCATARAGA-----
--TTGACCGAGAATTCC

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TAGDCATARAGA---
AGAGCCATAAAATTCG

MA0030.1_FOXF2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TAGDCATARAGA--
CAAACGTAAACAAT