Information for 20-ACTGGCAACTAG (Motif 19)


Reverse Opposite:

p-value:1e-4
log p-value:-1.042e+01
Information Content per bp:1.621
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets145.0 +/- 79.6bp
Average Position of motif in Background66.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0195.1_Zbtb3_2/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----ACTGGCAACTAG
CAATCACTGGCAGAAT-

MA0510.1_RFX5/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACTGGCAACTAG
CTCCCTGGCAACAGC

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ACTGGCAACTAG
-TTGCCAAG---

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ACTGGCAACTAG
SCCTAGCAACAG-

MA0100.2_Myb/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ACTGGCAACTAG
CCAACTGCCA-----

MA0161.1_NFIC/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ACTGGCAACTAG
-TTGGCA-----

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ACTGGCAACTAG
AATGGAAAAT--

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ACTGGCAACTAG
GGTCTGGCAT----

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ACTGGCAACTAG
VGCTGWCAVB---

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ACTGGCAACTAG
-AAGGCAAGTGT