Information for 5-AGGCCCTTTTGT (Motif 2)


Reverse Opposite:

p-value:1e-17
log p-value:-4.110e+01
Information Content per bp:1.728
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif10.76%
Number of Background Sequences with motif945.6
Percentage of Background Sequences with motif1.92%
Average Position of motif in Targets321.0 +/- 199.7bp
Average Position of motif in Background324.2 +/- 189.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0514.1_Sox3/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:forward strand
Alignment:AGGCCCTTTTGT---
-----CCTTTGTTTT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.62
Offset:5
Orientation:forward strand
Alignment:AGGCCCTTTTGT-
-----CCWTTGTY

MA0113.2_NR3C1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGCCCTTTTGT---
AGNACATTNTGTTCT

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGGCCCTTTTGT------
-TNNTCCTTTGTTCTNNT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGGCCCTTTTGT---
-----CCATTGTTNY

MA0143.3_Sox2/Jaspar

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGGCCCTTTTGT-
-----CCTTTGTT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGGCCCTTTTGT--
----NCCATTGTTC

MA0095.2_YY1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGGCCCTTTTGT
GCNGCCATCTTG-

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGGCCCTTTTGT--
VAGRACAKWCTGTYC

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGGCCCTTTTGT-----
--NNNCCATTGTGTNAN