Information for 5-ACAAAGCTCG (Motif 3)


Reverse Opposite:

p-value:1e-13
log p-value:-3.170e+01
Information Content per bp:1.674
Number of Target Sequences with motif145.0
Percentage of Target Sequences with motif38.06%
Number of Background Sequences with motif10303.9
Percentage of Background Sequences with motif20.93%
Average Position of motif in Targets310.1 +/- 194.2bp
Average Position of motif in Background315.1 +/- 191.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0442.1_SOX10/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:ACAAAGCTCG
ACAAAG----

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---ACAAAGCTCG
VRRACAAWGG---

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---ACAAAGCTCG
GGAACAAAGR---

MA0514.1_Sox3/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---ACAAAGCTCG
AAAACAAAGG---

MA0164.1_Nr2e3/Jaspar

Match Rank:5
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:ACAAAGCTCG
---AAGCTTG

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ACAAAGCTCG
RACAAWGG---

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------ACAAAGCTCG-
AGAAGAACAAAGGACTA

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ACAAAGCTCG
RNAACAATGG---

MA0515.1_Sox6/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ACAAAGCTCG
AAAACAATGG---

MA0143.3_Sox2/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ACAAAGCTCG
AACAAAGG---