Information for 7-GGCCAAACAA (Motif 4)


Reverse Opposite:

p-value:1e-12
log p-value:-2.820e+01
Information Content per bp:1.833
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif9.19%
Number of Background Sequences with motif1029.8
Percentage of Background Sequences with motif2.09%
Average Position of motif in Targets339.7 +/- 156.8bp
Average Position of motif in Background310.7 +/- 182.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GGCCAAACAA----
AACACCAAAACAAAGGA

MA0087.1_Sox5/Jaspar

Match Rank:2
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GGCCAAACAA-
----NAACAAT

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:GGCCAAACAA-
-----AACAAT

MA0084.1_SRY/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GGCCAAACAA-
--GTAAACAAT

PB0123.1_Foxl1_2/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAACAA----
ATATCAAAACAAAACA

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GGCCAAACAA
ACTAGCCAATCA-

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GGCCAAACAA---
---RNAACAATGG

MA0161.1_NFIC/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGCCAAACAA
TGCCAA----

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGCCAAACAA------
TCACGGAACAATAGGTG

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GGCCAAACAA---
---VRRACAAWGG