Information for 6-CTATTCAT (Motif 5)


Reverse Opposite:

p-value:1e-11
log p-value:-2.710e+01
Information Content per bp:1.825
Number of Target Sequences with motif199.0
Percentage of Target Sequences with motif52.23%
Number of Background Sequences with motif17069.3
Percentage of Background Sequences with motif34.68%
Average Position of motif in Targets336.0 +/- 207.0bp
Average Position of motif in Background313.0 +/- 193.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.41
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--CTATTCAT
GHATATKCAT

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CTATTCAT------
ACATTCATGACACG

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----CTATTCAT-----
GACCACATTCATACAAT

PB0068.1_Sox1_1/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CTATTCAT-----
AATCAATTCAATAATT

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTATTCAT-------
NNCATTCATTCATNNN

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTATTCAT--
CTATTTTTGG

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CTATTCAT-----
TNNATTATGCATANNTT

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTATTCAT---
KCTATTTTTRGH

MA0052.2_MEF2A/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CTATTCAT----
NNGCTATTTTTAGCN

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTATTCAT
TGAATTATGCAT