Information for 11-GTGGAGAGCCAG (Motif 8)


Reverse Opposite:

p-value:1e-8
log p-value:-2.027e+01
Information Content per bp:1.874
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif2.89%
Number of Background Sequences with motif109.1
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets298.5 +/- 214.6bp
Average Position of motif in Background314.2 +/- 205.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0130.1_ZNF354C/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTGGAGAGCCAG
GTGGAT------

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GTGGAGAGCCAG
AGGTGNCAGACAG

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GTGGAGAGCCAG
CTYRAGTGSY--

MA0056.1_MZF1_1-4/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GTGGAGAGCCAG
-TGGGGA-----

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTGGAGAGCCAG
-TTGAGTGSTT-

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GTGGAGAGCCAG
CTTGAGTGGCT-

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GTGGAGAGCCAG
GTGGCGTGACNG

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GTGGAGAGCCAG-
-NTGATTGACAGN

MA0591.1_Bach1::Mafk/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GTGGAGAGCCAG---
NTGCTGAGTCATCCN

MA0498.1_Meis1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GTGGAGAGCCAG--
NNNTGAGTGACAGCT