Information for 11-ACTGTGCACT (Motif 9)


Reverse Opposite:

p-value:1e-8
log p-value:-2.022e+01
Information Content per bp:1.842
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif11.55%
Number of Background Sequences with motif2050.8
Percentage of Background Sequences with motif4.17%
Average Position of motif in Targets286.1 +/- 235.4bp
Average Position of motif in Background315.9 +/- 192.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0026.1_Gm397_1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--ACTGTGCACT-----
CAGATGTGCACATACGT

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACTGTGCACT-----
TACATGTGCACATAAAA

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ACTGTGCACT
GCTGTG----

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ACTGTGCACT-----
NNNNTGAGCACTGTNNG

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------ACTGTGCACT
NNTCCTGCTGTGNNN-

MA0484.1_HNF4G/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ACTGTGCACT--
TGGACTTTGNNCTCN

MA0114.2_HNF4A/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ACTGTGCACT-
CTGGACTTTGGACTC

MA0479.1_FOXH1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ACTGTGCACT---
--TGTGGATTNNN

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ACTGTGCACT--
NNTGTGGATTSS

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ACTGTGCACT---
TGGACTTTGNNCTNTG